Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U0040_RS01090 Genome accession   NZ_CP140003
Coordinates   249348..249932 (+) Length   194 a.a.
NCBI ID   WP_114836365.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 244348..254932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS01065 (U0040_01065) - 245149..245271 (-) 123 WP_265935904.1 hypothetical protein -
  U0040_RS01070 (U0040_01070) - 245272..245646 (-) 375 WP_114836367.1 hypothetical protein -
  U0040_RS01075 (U0040_01075) tenA 245807..246481 (-) 675 WP_004691671.1 thiaminase II -
  U0040_RS01080 (U0040_01080) - 246693..247772 (+) 1080 WP_058870674.1 DUF475 domain-containing protein -
  U0040_RS01085 (U0040_01085) - 247932..249296 (+) 1365 WP_114836366.1 MFS transporter -
  U0040_RS01090 (U0040_01090) ssb 249348..249932 (+) 585 WP_114836365.1 single-stranded DNA-binding protein Machinery gene
  U0040_RS01095 (U0040_01095) - 250144..251562 (-) 1419 WP_114836364.1 aspartate ammonia-lyase -
  U0040_RS01100 (U0040_01100) - 251697..252587 (+) 891 WP_114836363.1 LysR substrate-binding domain-containing protein -
  U0040_RS01105 (U0040_01105) - 252724..254022 (-) 1299 WP_114836362.1 dicarboxylate/amino acid:cation symporter -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21274.00 Da        Isoelectric Point: 6.7311

>NTDB_id=912332 U0040_RS01090 WP_114836365.1 249348..249932(+) (ssb) [Acinetobacter johnsonii strain HAMBI_0097]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGHNNNNNQGGYGGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=912332 U0040_RS01090 WP_114836365.1 249348..249932(+) (ssb) [Acinetobacter johnsonii strain HAMBI_0097]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAACGGTGGTTC
GTTGACACAGTTTTCAATTGCAACGAGCGACTCTTGGACAGATAAAAGTACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGT
TCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACCACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGTGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACC
AAGGTGGTGGTCATAACAATAACAACAACCAAGGCGGTTATGGCGGCAATCCAGCAGCGGGCAATAGCAACAACCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCCAAGGCGGCTCCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria gonorrhoeae MS11

41

100

0.423
  ssb Neisseria meningitidis MC58

41.414

100

0.423