Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U0024_RS26480 Genome accession   NZ_CP139994
Coordinates   5765235..5765789 (-) Length   184 a.a.
NCBI ID   WP_302092620.1    Uniprot ID   -
Organism   Comamonas testosteroni strain HAMBI_0403     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5760235..5770789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0024_RS26460 (U0024_26470) moaC 5761347..5761823 (+) 477 WP_304351656.1 cyclic pyranopterin monophosphate synthase MoaC -
  U0024_RS26465 (U0024_26475) - 5761820..5763382 (-) 1563 WP_326999366.1 PglL family O-oligosaccharyltransferase -
  U0024_RS26470 (U0024_26480) - 5763510..5764013 (-) 504 WP_304351654.1 pilin -
  U0024_RS26475 (U0024_26485) - 5764202..5764918 (-) 717 WP_304351653.1 FHA domain-containing protein -
  U0024_RS26480 (U0024_26490) ssb 5765235..5765789 (-) 555 WP_302092620.1 single-stranded DNA-binding protein Machinery gene
  U0024_RS26485 (U0024_26495) - 5766063..5767235 (-) 1173 WP_302093153.1 MFS transporter -
  U0024_RS26490 (U0024_26500) uvrA 5767629..5770697 (+) 3069 WP_304351652.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20230.39 Da        Isoelectric Point: 5.9603

>NTDB_id=912311 U0024_RS26480 WP_302092620.1 5765235..5765789(-) (ssb) [Comamonas testosteroni strain HAMBI_0403]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADAMQMLGSRQGGGQQQGGYGSDDGYGESSYEAAPRRQAPAPMQQQRPAPAPMQQRAA
PAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=912311 U0024_RS26480 WP_302092620.1 5765235..5765789(-) (ssb) [Comamonas testosteroni strain HAMBI_0403]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACAGACCGCTGGCGCGACAAGAACACCGGCGAAAACCGCGAAGCCACCGAATGGC
ACCGCGTCGTCTTCAACGGCAAACTGGCCGAAATTGTGGGTCAGTACCTGCGCAAAGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGATGCGATGCA
GATGCTGGGCAGCCGCCAAGGCGGCGGTCAGCAGCAAGGCGGCTACGGCAGCGATGATGGCTATGGCGAAAGCAGCTACG
AAGCAGCACCCCGCCGTCAGGCTCCTGCACCCATGCAGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTGCTGCT
CCTGCTCCCATGGCTCCTCCTCCCCAGCGCGCAGCTTCGGGGTTTGACGATATGGATGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.646

100

0.56
  ssb Glaesserella parasuis strain SC1401

51.042

100

0.533
  ssb Neisseria gonorrhoeae MS11

47.826

100

0.478
  ssb Neisseria meningitidis MC58

45.604

98.913

0.451