Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U0004_RS00280 Genome accession   NZ_CP139976
Coordinates   68709..69218 (-) Length   169 a.a.
NCBI ID   WP_034781209.1    Uniprot ID   -
Organism   Janthinobacterium lividum strain HAMBI_1919     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 63709..74218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0004_RS00255 (U0004_00255) - 63753..65021 (-) 1269 WP_167468616.1 MFS transporter -
  U0004_RS00260 (U0004_00260) - 64996..65754 (-) 759 WP_070258663.1 nucleotidyltransferase domain-containing protein -
  U0004_RS00265 (U0004_00265) - 65751..66836 (-) 1086 WP_070258661.1 DUF455 family protein -
  U0004_RS00270 (U0004_00270) - 66945..68066 (-) 1122 WP_070258659.1 hypothetical protein -
  U0004_RS00275 (U0004_00275) - 68201..68425 (-) 225 WP_131688859.1 hypothetical protein -
  U0004_RS00280 (U0004_00280) ssb 68709..69218 (-) 510 WP_034781209.1 single-stranded DNA-binding protein Machinery gene
  U0004_RS00285 (U0004_00285) uvrA 69600..72449 (+) 2850 WP_070258657.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18092.27 Da        Isoelectric Point: 5.9466

>NTDB_id=912179 U0004_RS00280 WP_034781209.1 68709..69218(-) (ssb) [Janthinobacterium lividum strain HAMBI_1919]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRSGMGGDAGGGDDSYGGGGGYEAPAPRQAPAPRPAPAPAPRPAPKPAPNF
SDMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=912179 U0004_RS00280 WP_034781209.1 68709..69218(-) (ssb) [Janthinobacterium lividum strain HAMBI_1919]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCGCTACATGCCTAGCGGCGACGC
GATCGCCAACATCGCCGTGGCCACTTCGTACAAATCGAAGGACCGCAACACGGGCGAACAAAAAGAATTGACAGAGTGGC
ACCGTATCTCGTTCTTCGGCCGTCTGGCGGAAATCGTCGGCCAATACCTGAAAAAAGGTTCGTCCGTCTACGTCGAAGGC
CGTTTGCAAACCCGTAAATACACGGACAAGGACGGCGTCGAGAAGTACGCAACCGACATCATCGCGGAACAGATGCAAAT
GCTGGGCGGTCGTTCCGGCATGGGCGGCGACGCCGGCGGTGGTGATGACAGCTACGGTGGTGGCGGCGGCTACGAAGCCC
CGGCCCCGCGCCAGGCACCGGCTCCGCGCCCAGCCCCGGCACCGGCGCCACGCCCGGCACCGAAGCCAGCACCGAACTTC
TCGGATATGGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

52.273

100

0.544
  ssb Glaesserella parasuis strain SC1401

49.198

100

0.544
  ssb Neisseria gonorrhoeae MS11

51.685

100

0.544
  ssb Vibrio cholerae strain A1552

50.838

100

0.538