Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | U0544_RS01640 | Genome accession | NZ_CP139944 |
| Coordinates | 217077..217430 (+) | Length | 117 a.a. |
| NCBI ID | WP_326938879.1 | Uniprot ID | - |
| Organism | Acinetobacter pittii strain CARB128 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 187449..219795 | 217077..217430 | within | 0 |
Gene organization within MGE regions
Location: 187449..219795
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U0544_RS01445 (U0544_01445) | - | 187449..188456 (-) | 1008 | WP_326938869.1 | phage portal protein | - |
| U0544_RS01450 (U0544_01450) | - | 188457..190241 (-) | 1785 | WP_326938870.1 | terminase large subunit domain-containing protein | - |
| U0544_RS01455 (U0544_01455) | - | 190398..191201 (+) | 804 | WP_135536647.1 | GPO family capsid scaffolding protein | - |
| U0544_RS01460 (U0544_01460) | - | 191216..192205 (+) | 990 | WP_326938871.1 | phage major capsid protein, P2 family | - |
| U0544_RS01465 (U0544_01465) | gpM | 192216..192980 (+) | 765 | WP_032006096.1 | phage terminase small subunit | - |
| U0544_RS01470 (U0544_01470) | - | 193083..193535 (+) | 453 | WP_326938872.1 | head completion/stabilization protein | - |
| U0544_RS01475 (U0544_01475) | - | 193536..193745 (+) | 210 | WP_151299118.1 | tail protein X | - |
| U0544_RS01480 (U0544_01480) | - | 193754..194104 (+) | 351 | WP_001114936.1 | putative holin | - |
| U0544_RS01485 (U0544_01485) | - | 194101..194370 (+) | 270 | WP_000571491.1 | phage holin family protein | - |
| U0544_RS01490 (U0544_01490) | - | 194367..195197 (+) | 831 | WP_002056047.1 | N-acetylmuramidase domain-containing protein | - |
| U0544_RS01495 (U0544_01495) | - | 195194..195721 (+) | 528 | WP_326938873.1 | phage tail protein | - |
| U0544_RS01500 (U0544_01500) | - | 195718..196167 (+) | 450 | WP_320148350.1 | phage virion morphogenesis protein | - |
| U0544_RS01505 (U0544_01505) | - | 196240..196866 (+) | 627 | WP_326938874.1 | phage baseplate assembly protein V | - |
| U0544_RS01510 (U0544_01510) | - | 196863..197210 (+) | 348 | WP_032014595.1 | GPW/gp25 family protein | - |
| U0544_RS01515 (U0544_01515) | - | 197207..198109 (+) | 903 | WP_032014598.1 | baseplate J/gp47 family protein | - |
| U0544_RS01520 (U0544_01520) | - | 198109..198714 (+) | 606 | WP_086221961.1 | phage tail protein I | - |
| U0544_RS01525 (U0544_01525) | - | 198726..201194 (+) | 2469 | WP_326938875.1 | phage tail protein | - |
| U0544_RS01530 (U0544_01530) | - | 201208..201840 (+) | 633 | WP_032014606.1 | tail fiber domain-containing protein | - |
| U0544_RS01535 (U0544_01535) | - | 201931..203106 (+) | 1176 | WP_326938876.1 | phage tail sheath protein | - |
| U0544_RS01540 (U0544_01540) | - | 203119..203637 (+) | 519 | WP_001207611.1 | phage major tail tube protein | - |
| U0544_RS01545 (U0544_01545) | - | 203704..204045 (+) | 342 | WP_326938877.1 | phage tail assembly protein | - |
| U0544_RS01550 (U0544_01550) | - | 204081..204185 (+) | 105 | WP_227555080.1 | GpE family phage tail protein | - |
| U0544_RS01555 (U0544_01555) | - | 204199..206649 (+) | 2451 | WP_326938878.1 | phage tail tape measure protein | - |
| U0544_RS01560 (U0544_01560) | - | 206655..207095 (+) | 441 | WP_000979754.1 | phage tail protein | - |
| U0544_RS01565 (U0544_01565) | - | 207096..208410 (+) | 1315 | Protein_225 | DNA primase | - |
| U0544_RS01570 (U0544_01570) | - | 208541..208780 (+) | 240 | WP_000113727.1 | ogr/Delta-like zinc finger family protein | - |
| U0544_RS01575 (U0544_01575) | - | 208777..208977 (+) | 201 | WP_000130087.1 | TraR/DksA C4-type zinc finger protein | - |
| U0544_RS01580 (U0544_01580) | - | 209288..210034 (-) | 747 | WP_111937015.1 | hypothetical protein | - |
| U0544_RS01585 (U0544_01585) | - | 210106..210840 (-) | 735 | WP_000190074.1 | hypothetical protein | - |
| U0544_RS01590 (U0544_01590) | - | 211156..211350 (+) | 195 | WP_002001330.1 | hypothetical protein | - |
| U0544_RS01595 (U0544_01595) | - | 211353..211598 (+) | 246 | WP_000789360.1 | hypothetical protein | - |
| U0544_RS01600 (U0544_01600) | - | 211699..211914 (+) | 216 | WP_000556347.1 | hypothetical protein | - |
| U0544_RS01605 (U0544_01605) | - | 211959..212300 (-) | 342 | WP_000786717.1 | helix-turn-helix domain-containing protein | - |
| U0544_RS01610 (U0544_01610) | - | 212393..212584 (+) | 192 | WP_001043481.1 | hypothetical protein | - |
| U0544_RS01615 (U0544_01615) | - | 212678..215416 (+) | 2739 | WP_025464780.1 | toprim domain-containing protein | - |
| U0544_RS01620 (U0544_01620) | - | 215413..215748 (+) | 336 | WP_057097136.1 | hypothetical protein | - |
| U0544_RS01625 (U0544_01625) | - | 215816..216247 (+) | 432 | WP_001178667.1 | DUF2528 family protein | - |
| U0544_RS01630 (U0544_01630) | - | 216250..216768 (+) | 519 | WP_000877796.1 | hypothetical protein | - |
| U0544_RS01635 (U0544_01635) | - | 216772..217089 (+) | 318 | WP_000049862.1 | hypothetical protein | - |
| U0544_RS01640 (U0544_01640) | ssb | 217077..217430 (+) | 354 | WP_326938879.1 | single-stranded DNA-binding protein | Machinery gene |
| U0544_RS01645 (U0544_01645) | - | 217440..218177 (+) | 738 | WP_000125746.1 | 3'-5' exonuclease | - |
| U0544_RS01650 (U0544_01650) | - | 218186..218407 (+) | 222 | WP_005136253.1 | hypothetical protein | - |
| U0544_RS01655 (U0544_01655) | - | 218404..218700 (+) | 297 | WP_000218943.1 | hypothetical protein | - |
| U0544_RS01660 (U0544_01660) | - | 218728..219795 (-) | 1068 | WP_000107856.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 117 a.a. Molecular weight: 13305.02 Da Isoelectric Point: 9.7939
>NTDB_id=911895 U0544_RS01640 WP_326938879.1 217077..217430(+) (ssb) [Acinetobacter pittii strain CARB128]
MRGINKVILVGVLGANPIPKQFQNGGSYAQFSIATSEKYQDKRTGDWIENTEWHRIVAHNRLGEIACQFLKKGSKVYIEG
SLHTRKWTDQNNQDRYVTEVRAITFQSLDSVPQANPV
MRGINKVILVGVLGANPIPKQFQNGGSYAQFSIATSEKYQDKRTGDWIENTEWHRIVAHNRLGEIACQFLKKGSKVYIEG
SLHTRKWTDQNNQDRYVTEVRAITFQSLDSVPQANPV
Nucleotide
Download Length: 354 bp
>NTDB_id=911895 U0544_RS01640 WP_326938879.1 217077..217430(+) (ssb) [Acinetobacter pittii strain CARB128]
ATGCGCGGAATAAACAAAGTGATATTGGTCGGTGTGCTTGGTGCCAATCCAATTCCTAAACAGTTTCAAAACGGTGGCTC
CTATGCTCAGTTTTCAATTGCCACTTCAGAAAAATACCAGGACAAACGAACTGGTGACTGGATTGAAAATACAGAGTGGC
ATCGTATTGTTGCCCACAACAGACTAGGAGAAATTGCCTGCCAATTTCTTAAAAAAGGTTCAAAAGTTTATATCGAAGGG
TCATTACATACACGGAAATGGACTGACCAAAACAATCAAGACCGTTACGTAACTGAAGTTAGAGCCATTACTTTTCAATC
GCTCGATAGCGTGCCACAAGCAAACCCGGTTTAA
ATGCGCGGAATAAACAAAGTGATATTGGTCGGTGTGCTTGGTGCCAATCCAATTCCTAAACAGTTTCAAAACGGTGGCTC
CTATGCTCAGTTTTCAATTGCCACTTCAGAAAAATACCAGGACAAACGAACTGGTGACTGGATTGAAAATACAGAGTGGC
ATCGTATTGTTGCCCACAACAGACTAGGAGAAATTGCCTGCCAATTTCTTAAAAAAGGTTCAAAAGTTTATATCGAAGGG
TCATTACATACACGGAAATGGACTGACCAAAACAATCAAGACCGTTACGTAACTGAAGTTAGAGCCATTACTTTTCAATC
GCTCGATAGCGTGCCACAAGCAAACCCGGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56.364 |
94.017 |
0.53 |
| ssb | Vibrio cholerae strain A1552 |
55.556 |
84.615 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
41.905 |
89.744 |
0.376 |
| ssb | Neisseria meningitidis MC58 |
41.905 |
89.744 |
0.376 |