Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SJH90_RS01850 Genome accession   NZ_CP139937
Coordinates   369915..370436 (+) Length   173 a.a.
NCBI ID   WP_043081684.1    Uniprot ID   -
Organism   Pluralibacter gergoviae strain L1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 364915..375436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH90_RS01830 aphA 365241..365948 (+) 708 WP_407084573.1 acid phosphatase AphA -
  SJH90_RS01835 - 366059..366475 (+) 417 WP_043081679.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  SJH90_RS01840 - 366478..366831 (+) 354 WP_043081680.1 MmcQ/YjbR family DNA-binding protein -
  SJH90_RS01845 uvrA 366832..369657 (-) 2826 WP_048253998.1 excinuclease ABC subunit UvrA -
  SJH90_RS01850 ssb 369915..370436 (+) 522 WP_043081684.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SJH90_RS01855 - 371015..371509 (+) 495 WP_048253997.1 hypothetical protein -
  SJH90_RS01860 tssJ 371534..372040 (+) 507 WP_043081689.1 type VI secretion system lipoprotein TssJ -
  SJH90_RS01865 tssK 372063..373406 (+) 1344 WP_043081691.1 type VI secretion system baseplate subunit TssK -
  SJH90_RS01870 - 373425..374690 (+) 1266 WP_043081692.1 DotU family type VI secretion system protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18614.66 Da        Isoelectric Point: 5.2358

>NTDB_id=911874 SJH90_RS01850 WP_043081684.1 369915..370436(+) (ssb) [Pluralibacter gergoviae strain L1]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVTNIRIATSESWRDKASGEMKEVTEWHTVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGNDRYSTEIVVGMNGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSSAPAPS
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=911874 SJH90_RS01850 WP_043081684.1 369915..370436(+) (ssb) [Pluralibacter gergoviae strain L1]
ATGGCCAGCAGAGGCGTAAACAAGGTAATTCTCGTCGGTAATCTGGGTCAGGACCCGGAAGTCCGCTATATGCCAAGCGG
CGGGGCCGTGACGAACATTCGTATCGCCACCTCCGAATCCTGGCGCGACAAGGCGTCCGGCGAAATGAAAGAAGTGACCG
AATGGCACACCGTGGTGATGTTCGGCAAGCTGGCGGAAGTGGCCGGCGAATACCTGCGTAAAGGCTCTCAGGTGTACATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGACCAGAGCGGCAACGATCGCTACTCGACCGAAATCGTCGTCGGCATGAA
CGGCGTGATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTGGTCAGCAGCAGGGCGGCTGGGGCCAGC
CGCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCTCCGCGCCGGCGCCGTCC
AACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.792
  ssb Glaesserella parasuis strain SC1401

58.242

100

0.613
  ssb Neisseria meningitidis MC58

47.753

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.491