Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | L6419_RS00820 | Genome accession | NZ_AP025332 |
| Coordinates | 128611..129564 (+) | Length | 317 a.a. |
| NCBI ID | WP_237375496.1 | Uniprot ID | - |
| Organism | Streptococcus ruminantium strain GUT-184 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 123611..134564
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6419_RS00780 (GUT184_01230) | - | 123837..124787 (-) | 951 | WP_237375492.1 | S66 family peptidase | - |
| L6419_RS00785 (GUT184_01240) | comYA | 124949..125899 (+) | 951 | WP_155962599.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| L6419_RS00790 (GUT184_01250) | comYB | 125820..126851 (+) | 1032 | WP_272877595.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| L6419_RS00795 (GUT184_01260) | comYC | 126848..127129 (+) | 282 | WP_024532254.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| L6419_RS00800 (GUT184_01270) | comGD | 127116..127529 (+) | 414 | WP_024532253.1 | competence type IV pilus minor pilin ComGD | - |
| L6419_RS00805 (GUT184_01280) | comYE | 127501..127794 (+) | 294 | WP_237375494.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| L6419_RS00810 (GUT184_01290) | comGF/cglF | 127781..128215 (+) | 435 | WP_024532251.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| L6419_RS00815 (GUT184_01300) | comGG | 128193..128606 (+) | 414 | WP_156011187.1 | competence type IV pilus minor pilin ComGG | - |
| L6419_RS00820 (GUT184_01310) | comYH | 128611..129564 (+) | 954 | WP_237375496.1 | class I SAM-dependent methyltransferase | Machinery gene |
| L6419_RS00825 (GUT184_01320) | - | 129614..130801 (+) | 1188 | WP_237375497.1 | acetate kinase | - |
| L6419_RS00830 (GUT184_01330) | - | 131106..131660 (+) | 555 | WP_024532247.1 | folate family ECF transporter S component | - |
| L6419_RS00835 (GUT184_01340) | - | 131759..133015 (+) | 1257 | WP_237375498.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| L6419_RS00840 (GUT184_01350) | pepA | 133329..134390 (-) | 1062 | WP_120171212.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35851.99 Da Isoelectric Point: 4.4003
>NTDB_id=91171 L6419_RS00820 WP_237375496.1 128611..129564(+) (comYH) [Streptococcus ruminantium strain GUT-184]
MNFEKIEQVYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHEIDLIARNNQTMKGLDLTKEEWRRSYQFLLIKANQT
EPLQYNHQFTPDSIGFILSFLVDQLISTPRVTILEIGSGTGNLAQTILNASQKKLDYLGIEVDDLLIDLSASIADVMEAE
ISFAQGDAVRPQILKESQVILSDLPIGYYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKIWLQEQANIVAMIALPPTLFGKAAMAKSIFILQKQTARALTPFVYPLQSLQDPETVQQFMINFKNWKQENAI
MNFEKIEQVYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHEIDLIARNNQTMKGLDLTKEEWRRSYQFLLIKANQT
EPLQYNHQFTPDSIGFILSFLVDQLISTPRVTILEIGSGTGNLAQTILNASQKKLDYLGIEVDDLLIDLSASIADVMEAE
ISFAQGDAVRPQILKESQVILSDLPIGYYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKIWLQEQANIVAMIALPPTLFGKAAMAKSIFILQKQTARALTPFVYPLQSLQDPETVQQFMINFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=91171 L6419_RS00820 WP_237375496.1 128611..129564(+) (comYH) [Streptococcus ruminantium strain GUT-184]
ATGAATTTTGAAAAGATTGAACAGGTCTATGACCTGCTATTAGAAAATGTACAGACCATCCAAAATCAGTTGGGTACGAA
TATTTATGATGCCATGATTGAGCAGAATGCAGCCTACGTAGCTGGCCAGCATGAGATTGATTTGATTGCAAGGAACAACC
AGACTATGAAAGGTTTAGACTTGACTAAGGAAGAATGGCGTCGTTCCTATCAATTTCTCTTAATCAAGGCTAATCAGACG
GAACCTCTTCAGTATAATCATCAATTTACACCAGATTCAATAGGCTTTATCTTGTCATTTTTAGTGGATCAGCTTATTTC
AACCCCACGAGTGACAATCTTAGAAATCGGATCAGGGACAGGAAATTTAGCCCAGACTATTCTCAATGCTAGCCAGAAAA
AACTAGATTATCTTGGTATTGAAGTGGATGACCTTTTGATCGACTTATCAGCCAGTATCGCAGATGTCATGGAGGCAGAA
ATTAGCTTTGCTCAAGGTGATGCAGTGCGTCCGCAGATTTTGAAGGAAAGCCAAGTCATTTTAAGTGATTTGCCGATTGG
CTACTATCCAGATGACCAGATTGCTAGTCGCTATCAGGTAGCCAGTCAGACGGAGCATACCTACGCTCACCATTTGCTCA
TGGAACAATCTCTCAAGTATCTTGAGAAAGATGGATTTGCCATTCTCTTGGCTCCCAATGACCTTTTGACTAGTCCACAA
AGCGACCTATTGAAAATCTGGCTACAGGAGCAGGCCAATATTGTAGCTATGATTGCTCTTCCGCCAACCTTATTTGGAAA
AGCTGCCATGGCTAAGTCTATTTTTATTCTACAAAAACAAACAGCTAGAGCATTGACTCCCTTTGTTTACCCTTTGCAAA
GTCTCCAAGACCCGGAGACAGTTCAACAGTTTATGATCAATTTTAAAAATTGGAAGCAAGAAAATGCAATTTAA
ATGAATTTTGAAAAGATTGAACAGGTCTATGACCTGCTATTAGAAAATGTACAGACCATCCAAAATCAGTTGGGTACGAA
TATTTATGATGCCATGATTGAGCAGAATGCAGCCTACGTAGCTGGCCAGCATGAGATTGATTTGATTGCAAGGAACAACC
AGACTATGAAAGGTTTAGACTTGACTAAGGAAGAATGGCGTCGTTCCTATCAATTTCTCTTAATCAAGGCTAATCAGACG
GAACCTCTTCAGTATAATCATCAATTTACACCAGATTCAATAGGCTTTATCTTGTCATTTTTAGTGGATCAGCTTATTTC
AACCCCACGAGTGACAATCTTAGAAATCGGATCAGGGACAGGAAATTTAGCCCAGACTATTCTCAATGCTAGCCAGAAAA
AACTAGATTATCTTGGTATTGAAGTGGATGACCTTTTGATCGACTTATCAGCCAGTATCGCAGATGTCATGGAGGCAGAA
ATTAGCTTTGCTCAAGGTGATGCAGTGCGTCCGCAGATTTTGAAGGAAAGCCAAGTCATTTTAAGTGATTTGCCGATTGG
CTACTATCCAGATGACCAGATTGCTAGTCGCTATCAGGTAGCCAGTCAGACGGAGCATACCTACGCTCACCATTTGCTCA
TGGAACAATCTCTCAAGTATCTTGAGAAAGATGGATTTGCCATTCTCTTGGCTCCCAATGACCTTTTGACTAGTCCACAA
AGCGACCTATTGAAAATCTGGCTACAGGAGCAGGCCAATATTGTAGCTATGATTGCTCTTCCGCCAACCTTATTTGGAAA
AGCTGCCATGGCTAAGTCTATTTTTATTCTACAAAAACAAACAGCTAGAGCATTGACTCCCTTTGTTTACCCTTTGCAAA
GTCTCCAAGACCCGGAGACAGTTCAACAGTTTATGATCAATTTTAAAAATTGGAAGCAAGAAAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
61.076 |
99.685 |
0.609 |
| comYH | Streptococcus mutans UA159 |
60.759 |
99.685 |
0.606 |