Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   U0450_RS05150 Genome accession   NZ_CP139863
Coordinates   1027023..1027259 (-) Length   78 a.a.
NCBI ID   WP_000939548.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P2112     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1022023..1032259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0450_RS05120 radA 1022316..1023677 (-) 1362 WP_074017595.1 DNA repair protein RadA Machinery gene
  U0450_RS05125 - 1023691..1024206 (-) 516 WP_000691236.1 histidine phosphatase family protein -
  U0450_RS05130 - 1024208..1024651 (-) 444 WP_000701992.1 dUTP diphosphatase -
  U0450_RS05140 tadA 1024838..1025305 (-) 468 WP_000291875.1 tRNA adenosine(34) deaminase TadA -
  U0450_RS05145 - 1025506..1026792 (-) 1287 WP_000205044.1 adenylosuccinate synthase -
  U0450_RS05150 comW 1027023..1027259 (-) 237 WP_000939548.1 sigma(X)-activator ComW Regulator
  U0450_RS05155 - 1027525..1028233 (+) 709 Protein_1024 transposase -
  U0450_RS05160 - 1028268..1028477 (-) 210 Protein_1025 transposase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9716.17 Da        Isoelectric Point: 6.7051

>NTDB_id=911554 U0450_RS05150 WP_000939548.1 1027023..1027259(-) (comW) [Streptococcus pneumoniae strain 15P2112]
MLQKIYEQMTNFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=911554 U0450_RS05150 WP_000939548.1 1027023..1027259(-) (comW) [Streptococcus pneumoniae strain 15P2112]
ATGTTACAAAAAATTTATGAGCAGATGACTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

97.436

100

0.974
  comW Streptococcus pneumoniae D39

97.436

100

0.974
  comW Streptococcus pneumoniae R6

97.436

100

0.974
  comW Streptococcus pneumoniae TIGR4

97.436

100

0.974
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756