Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | ABVR75_RS04815 | Genome accession | NZ_CP159464 |
| Coordinates | 913451..914731 (-) | Length | 426 a.a. |
| NCBI ID | WP_011374543.1 | Uniprot ID | Q38XE0 |
| Organism | Latilactobacillus sakei subsp. sakei strain CBA3649 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 908451..919731
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABVR75_RS04790 (ABVR75_04790) | - | 909161..909811 (+) | 651 | WP_016265014.1 | HAD family phosphatase | - |
| ABVR75_RS04795 (ABVR75_04795) | - | 909951..910805 (+) | 855 | WP_025015819.1 | helix-turn-helix transcriptional regulator | - |
| ABVR75_RS04800 (ABVR75_04800) | - | 910875..912247 (+) | 1373 | WP_094365751.1 | IS3-like element ISLsa2 family transposase | - |
| ABVR75_RS04805 (ABVR75_04805) | - | 912304..912798 (-) | 495 | WP_011374541.1 | universal stress protein | - |
| ABVR75_RS04810 (ABVR75_04810) | - | 912861..913136 (-) | 276 | WP_016265016.1 | hypothetical protein | - |
| ABVR75_RS04815 (ABVR75_04815) | rarA | 913451..914731 (-) | 1281 | WP_011374543.1 | replication-associated recombination protein A | Machinery gene |
| ABVR75_RS04820 (ABVR75_04820) | gshAB | 914864..917143 (+) | 2280 | WP_353891521.1 | bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB | - |
| ABVR75_RS04825 (ABVR75_04825) | - | 917199..917642 (-) | 444 | WP_254680900.1 | YueI family protein | - |
| ABVR75_RS04830 (ABVR75_04830) | - | 917713..918318 (+) | 606 | WP_254680901.1 | DUF1054 domain-containing protein | - |
| ABVR75_RS04835 (ABVR75_04835) | rpsD | 918414..919019 (-) | 606 | WP_011374547.1 | 30S ribosomal protein S4 | - |
Sequence
Protein
Download Length: 426 a.a. Molecular weight: 46634.27 Da Isoelectric Point: 6.8680
>NTDB_id=911554 ABVR75_RS04815 WP_011374543.1 913451..914731(-) (rarA) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MQQPLAYRMRPTNIDEIVGQTHLVGPQKIIRRMVDAKLLSSMILYGPPGTGKTSIASAIAGSTQYAFRMLNAATDSKKDL
QIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRIVLIGATTENPYITINPAIRSRTQIFEVHPLNEADIHVAIQ
RALTDPQKGLGDEPVNLDETAEKYLAQVTNGDLRSALNALELAVRSTPKNPETGLIDIDIAVIEECVQRKAITHDKDGDA
HYDVISAFQKSVRGSDVDAALHYMGRLIEAGDLPSISRRLMTMAYEDVGLANPQACARTVEAVTAAKQLGFPEARIPLAV
AVIDLCLSPKSNSAITAIDNALGDIRAGKAGEVPAHLKDAHYAGAAKLGHGVDYKYPHNYPNDWVAQDYLPTKLLGSHYY
EAKATGKYEQVLKQQLERLRQASRHK
MQQPLAYRMRPTNIDEIVGQTHLVGPQKIIRRMVDAKLLSSMILYGPPGTGKTSIASAIAGSTQYAFRMLNAATDSKKDL
QIVAEEAKMSGTVILLLDEIHRLDKTKQDFLLPHLESGRIVLIGATTENPYITINPAIRSRTQIFEVHPLNEADIHVAIQ
RALTDPQKGLGDEPVNLDETAEKYLAQVTNGDLRSALNALELAVRSTPKNPETGLIDIDIAVIEECVQRKAITHDKDGDA
HYDVISAFQKSVRGSDVDAALHYMGRLIEAGDLPSISRRLMTMAYEDVGLANPQACARTVEAVTAAKQLGFPEARIPLAV
AVIDLCLSPKSNSAITAIDNALGDIRAGKAGEVPAHLKDAHYAGAAKLGHGVDYKYPHNYPNDWVAQDYLPTKLLGSHYY
EAKATGKYEQVLKQQLERLRQASRHK
Nucleotide
Download Length: 1281 bp
>NTDB_id=911554 ABVR75_RS04815 WP_011374543.1 913451..914731(-) (rarA) [Latilactobacillus sakei subsp. sakei strain CBA3649]
ATGCAACAACCACTCGCATATCGTATGCGCCCCACAAATATCGATGAAATTGTGGGTCAAACACACTTAGTGGGTCCGCA
AAAAATCATTCGACGAATGGTTGATGCCAAATTACTCTCGTCAATGATTCTTTATGGCCCACCTGGCACCGGAAAAACCA
GTATTGCCAGCGCCATTGCTGGTAGTACGCAATACGCCTTTCGGATGCTGAATGCCGCAACAGATAGTAAAAAGGATCTT
CAAATTGTCGCTGAAGAAGCTAAAATGAGCGGCACTGTTATTTTATTACTCGATGAAATTCATCGGCTCGATAAAACAAA
ACAGGATTTCTTACTGCCCCATCTCGAAAGCGGTCGGATTGTTCTAATTGGCGCTACTACCGAAAATCCCTACATCACGA
TCAACCCCGCCATTCGGAGTCGGACCCAGATATTTGAAGTTCACCCACTTAATGAAGCCGATATTCACGTCGCCATCCAG
CGGGCCTTAACCGACCCGCAAAAAGGCTTGGGCGATGAACCCGTTAACCTCGATGAAACGGCTGAAAAATACCTCGCACA
AGTCACCAATGGTGATCTTCGAAGTGCCTTAAACGCGCTAGAATTAGCCGTCCGCTCGACACCTAAAAACCCAGAAACTG
GTTTAATCGACATTGATATTGCTGTCATTGAGGAATGCGTTCAAAGAAAGGCCATTACCCATGATAAAGATGGCGATGCG
CACTATGACGTCATCTCGGCTTTTCAAAAATCTGTTCGCGGTAGCGACGTTGACGCCGCTTTACATTATATGGGCCGCTT
AATTGAAGCCGGTGATCTGCCTTCCATTAGTCGCCGTTTGATGACGATGGCTTATGAAGACGTTGGTTTAGCTAATCCGC
AAGCCTGCGCTCGAACCGTTGAAGCAGTAACAGCCGCCAAGCAATTAGGTTTCCCCGAAGCACGGATTCCATTGGCAGTT
GCCGTGATTGATCTCTGTCTCTCACCAAAATCAAACTCCGCTATCACAGCAATCGATAATGCGTTAGGCGACATTCGCGC
CGGTAAGGCCGGTGAAGTGCCCGCGCATTTAAAAGACGCCCATTACGCCGGTGCTGCTAAGCTTGGTCATGGTGTAGACT
ACAAGTATCCACACAACTATCCCAATGATTGGGTCGCACAAGATTACCTCCCGACAAAACTTTTAGGGAGTCATTACTAC
GAAGCCAAAGCAACTGGTAAATACGAGCAAGTTTTAAAACAACAACTTGAACGGCTGAGACAAGCAAGCCGCCACAAGTG
A
ATGCAACAACCACTCGCATATCGTATGCGCCCCACAAATATCGATGAAATTGTGGGTCAAACACACTTAGTGGGTCCGCA
AAAAATCATTCGACGAATGGTTGATGCCAAATTACTCTCGTCAATGATTCTTTATGGCCCACCTGGCACCGGAAAAACCA
GTATTGCCAGCGCCATTGCTGGTAGTACGCAATACGCCTTTCGGATGCTGAATGCCGCAACAGATAGTAAAAAGGATCTT
CAAATTGTCGCTGAAGAAGCTAAAATGAGCGGCACTGTTATTTTATTACTCGATGAAATTCATCGGCTCGATAAAACAAA
ACAGGATTTCTTACTGCCCCATCTCGAAAGCGGTCGGATTGTTCTAATTGGCGCTACTACCGAAAATCCCTACATCACGA
TCAACCCCGCCATTCGGAGTCGGACCCAGATATTTGAAGTTCACCCACTTAATGAAGCCGATATTCACGTCGCCATCCAG
CGGGCCTTAACCGACCCGCAAAAAGGCTTGGGCGATGAACCCGTTAACCTCGATGAAACGGCTGAAAAATACCTCGCACA
AGTCACCAATGGTGATCTTCGAAGTGCCTTAAACGCGCTAGAATTAGCCGTCCGCTCGACACCTAAAAACCCAGAAACTG
GTTTAATCGACATTGATATTGCTGTCATTGAGGAATGCGTTCAAAGAAAGGCCATTACCCATGATAAAGATGGCGATGCG
CACTATGACGTCATCTCGGCTTTTCAAAAATCTGTTCGCGGTAGCGACGTTGACGCCGCTTTACATTATATGGGCCGCTT
AATTGAAGCCGGTGATCTGCCTTCCATTAGTCGCCGTTTGATGACGATGGCTTATGAAGACGTTGGTTTAGCTAATCCGC
AAGCCTGCGCTCGAACCGTTGAAGCAGTAACAGCCGCCAAGCAATTAGGTTTCCCCGAAGCACGGATTCCATTGGCAGTT
GCCGTGATTGATCTCTGTCTCTCACCAAAATCAAACTCCGCTATCACAGCAATCGATAATGCGTTAGGCGACATTCGCGC
CGGTAAGGCCGGTGAAGTGCCCGCGCATTTAAAAGACGCCCATTACGCCGGTGCTGCTAAGCTTGGTCATGGTGTAGACT
ACAAGTATCCACACAACTATCCCAATGATTGGGTCGCACAAGATTACCTCCCGACAAAACTTTTAGGGAGTCATTACTAC
GAAGCCAAAGCAACTGGTAAATACGAGCAAGTTTTAAAACAACAACTTGAACGGCTGAGACAAGCAAGCCGCCACAAGTG
A
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
66.427 |
97.887 |
0.65 |