Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U0541_RS03580 Genome accession   NZ_CP139850
Coordinates   333769..334293 (+) Length   174 a.a.
NCBI ID   WP_048241790.1    Uniprot ID   -
Organism   Citrobacter freundii strain UKJ86     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 328769..339293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0541_RS03565 (U0541_03565) aphA 329382..330095 (+) 714 WP_003826615.1 acid phosphatase AphA -
  U0541_RS03570 (U0541_03570) - 330223..330579 (+) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  U0541_RS03575 (U0541_03575) uvrA 330695..333517 (-) 2823 WP_003031720.1 excinuclease ABC subunit UvrA -
  U0541_RS03580 (U0541_03580) ssb 333769..334293 (+) 525 WP_048241790.1 single-stranded DNA-binding protein SSB1 Machinery gene
  U0541_RS03585 (U0541_03585) - 334775..337084 (+) 2310 WP_048241788.1 autotransporter outer membrane beta-barrel domain-containing protein -
  U0541_RS03590 (U0541_03590) - 337168..337449 (-) 282 WP_003844730.1 YjcB family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18637.70 Da        Isoelectric Point: 5.2456

>NTDB_id=911249 U0541_RS03580 WP_048241790.1 333769..334293(+) (ssb) [Citrobacter freundii strain UKJ86]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRLQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=911249 U0541_RS03580 WP_048241790.1 333769..334293(+) (ssb) [Citrobacter freundii strain UKJ86]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAGGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCTGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.826

100

0.77
  ssb Glaesserella parasuis strain SC1401

56.284

100

0.592
  ssb Neisseria meningitidis MC58

48.045

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.494