Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   U0543_RS09470 Genome accession   NZ_CP139836
Coordinates   1960480..1960806 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain B84     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1955480..1965806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0543_RS09450 (U0543_09450) - 1955587..1956216 (-) 630 WP_000219964.1 FHA domain-containing protein -
  U0543_RS09455 (U0543_09455) gspD 1956257..1958527 (-) 2271 WP_001196431.1 type II secretion system secretin GspD -
  U0543_RS09460 (U0543_09460) - 1958569..1959405 (-) 837 WP_000870031.1 type II secretion system protein N -
  U0543_RS09465 (U0543_09465) gspN 1959405..1960149 (-) 745 Protein_1859 type II secretion system protein N -
  U0543_RS09470 (U0543_09470) hns 1960480..1960806 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  U0543_RS09475 (U0543_09475) - 1961001..1961441 (-) 441 WP_057078042.1 thioesterase family protein -
  U0543_RS09480 (U0543_09480) - 1961449..1962642 (-) 1194 WP_029424457.1 membrane protein -
  U0543_RS09485 (U0543_09485) - 1962652..1963491 (-) 840 WP_029424458.1 hypothetical protein -
  U0543_RS09490 (U0543_09490) - 1963500..1964267 (-) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  U0543_RS09495 (U0543_09495) hemC 1964272..1965189 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=911198 U0543_RS09470 WP_000801427.1 1960480..1960806(-) (hns) [Acinetobacter baumannii strain B84]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=911198 U0543_RS09470 WP_000801427.1 1960480..1960806(-) (hns) [Acinetobacter baumannii strain B84]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1