Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   ABQ274_RS00945 Genome accession   NZ_CP159281
Coordinates   180535..181533 (+) Length   332 a.a.
NCBI ID   WP_353727366.1    Uniprot ID   -
Organism   Lactococcus lactis strain FNZ339     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 175535..186533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ274_RS00935 (ABQ274_00935) - 176816..178822 (+) 2007 WP_353727364.1 cell division site-positioning protein MapZ family protein -
  ABQ274_RS00940 (ABQ274_00940) - 179232..180320 (-) 1089 WP_003129448.1 Xaa-Pro peptidase family protein -
  ABQ274_RS00945 (ABQ274_00945) ccpA 180535..181533 (+) 999 WP_353727366.1 catabolite control protein A Regulator
  ABQ274_RS00950 (ABQ274_00950) - 181671..182636 (+) 966 WP_003129446.1 NAD(P)/FAD-dependent oxidoreductase -
  ABQ274_RS00955 (ABQ274_00955) - 182796..183356 (+) 561 WP_003129445.1 CvpA family protein -
  ABQ274_RS00960 (ABQ274_00960) mutS/mutS2 183401..185731 (+) 2331 WP_003129443.1 endonuclease MutS2 Machinery gene
  ABQ274_RS00965 (ABQ274_00965) trxA 185828..186142 (+) 315 WP_003129442.1 thioredoxin -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36636.73 Da        Isoelectric Point: 4.9196

>NTDB_id=911137 ABQ274_RS00945 WP_353727366.1 180535..181533(+) (ccpA) [Lactococcus lactis strain FNZ339]
MVESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKLIDSGNKKIAYIMGSFKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=911137 ABQ274_RS00945 WP_353727366.1 180535..181533(+) (ccpA) [Lactococcus lactis strain FNZ339]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACCGTTAGTCGTGTTGTAAA
TGGAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGAAGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGCGGACTCGCAAGTAAACGTACAACAACAGTTGGTGTTATCTTGCCAACCATCACATCAACTTACTTCGCAGCG
ATTACTCGCGGGGTTGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGACGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACTTCCCTCAAAAATTCAAGAACACCTGTCGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAATTGATTGATAGCGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTTAAAGACGTTGAAAATACAGAACGCATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATATTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGAAAAGCACTTGCTGAACGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTGTCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTAACTTCTGTTAACCAACCCC
TTTACGATTTGGGAGCAGTAGCAATGCGTCTTTTGACAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGTCGTTCTACCAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

99.699

100

0.997
  ccpA Streptococcus pneumoniae D39

57.1

99.699

0.569
  ccpA Streptococcus gordonii str. Challis substr. CH1

56.798

99.699

0.566