Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   U0542_RS07925 Genome accession   NZ_CP139831
Coordinates   1493760..1494644 (-) Length   294 a.a.
NCBI ID   WP_000914776.1    Uniprot ID   A0A9P3CWB8
Organism   Acinetobacter baumannii strain Nord12-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1488760..1499644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0542_RS07910 (U0542_07910) miaB 1490607..1492058 (+) 1452 WP_000218140.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  U0542_RS07915 (U0542_07915) - 1492096..1493184 (+) 1089 WP_000122983.1 PhoH family protein -
  U0542_RS07920 (U0542_07920) ybeY 1493194..1493670 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  U0542_RS07925 (U0542_07925) tonB2 1493760..1494644 (-) 885 WP_000914776.1 energy transducer TonB Machinery gene
  U0542_RS07930 (U0542_07930) - 1494875..1495546 (+) 672 WP_001193958.1 hypothetical protein -
  U0542_RS07935 (U0542_07935) - 1495704..1496417 (+) 714 WP_000201548.1 DUF3108 domain-containing protein -
  U0542_RS07940 (U0542_07940) - 1496490..1497065 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  U0542_RS07945 (U0542_07945) wrbA 1497118..1497712 (-) 595 Protein_1401 NAD(P)H:quinone oxidoreductase -
  U0542_RS07950 (U0542_07950) - 1498000..1499247 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33650.54 Da        Isoelectric Point: 9.0935

>NTDB_id=911138 U0542_RS07925 WP_000914776.1 1493760..1494644(-) (tonB2) [Acinetobacter baumannii strain Nord12-3]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=911138 U0542_RS07925 WP_000914776.1 1493760..1494644(-) (tonB2) [Acinetobacter baumannii strain Nord12-3]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCATTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997