Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABU973_RS15530 Genome accession   NZ_CP159170
Coordinates   2965257..2965793 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 10035776-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2960257..2970793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU973_RS15510 (ABU973_15510) aphA 2960545..2961258 (+) 714 WP_001226928.1 acid phosphatase AphA -
  ABU973_RS15515 (ABU973_15515) yjbQ 2961369..2961785 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABU973_RS15520 (ABU973_15520) yjbR 2961789..2962145 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ABU973_RS15525 (ABU973_15525) uvrA 2962180..2965002 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  ABU973_RS15530 (ABU973_15530) ssb 2965257..2965793 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABU973_RS15535 (ABU973_15535) yjcB 2965892..2966173 (-) 282 WP_001295689.1 YjcB family protein -
  ABU973_RS15540 (ABU973_15540) pdeC 2966602..2968185 (+) 1584 WP_000019571.1 c-di-GMP phosphodiesterase PdeC -
  ABU973_RS15545 (ABU973_15545) soxS 2968191..2968514 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ABU973_RS15550 (ABU973_15550) soxR 2968600..2969064 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=911104 ABU973_RS15530 WP_000168305.1 2965257..2965793(+) (ssb) [Escherichia coli strain 10035776-3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=911104 ABU973_RS15530 WP_000168305.1 2965257..2965793(+) (ssb) [Escherichia coli strain 10035776-3]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489