Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SOM08_RS19500 Genome accession   NZ_CP139793
Coordinates   4070887..4071384 (+) Length   165 a.a.
NCBI ID   WP_322469549.1    Uniprot ID   -
Organism   Hydrogenophaga sp. SNF1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4065887..4076384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOM08_RS19485 (SOM08_19485) - 4066608..4067975 (+) 1368 WP_322469548.1 CoA-binding protein -
  SOM08_RS19490 (SOM08_19490) - 4068131..4069300 (+) 1170 WP_116959667.1 MFS transporter -
  SOM08_RS19495 (SOM08_19495) - 4069301..4070770 (-) 1470 WP_116959666.1 chloride channel protein -
  SOM08_RS19500 (SOM08_19500) ssb 4070887..4071384 (+) 498 WP_322469549.1 single-stranded DNA-binding protein Machinery gene
  SOM08_RS19505 (SOM08_19505) - 4071606..4072211 (+) 606 WP_239478182.1 LuxR C-terminal-related transcriptional regulator -
  SOM08_RS19510 (SOM08_19510) - 4072463..4072822 (+) 360 WP_116959664.1 hypothetical protein -
  SOM08_RS19515 (SOM08_19515) - 4072903..4073682 (-) 780 WP_322469550.1 hypothetical protein -
  SOM08_RS19520 (SOM08_19520) - 4073799..4076129 (+) 2331 WP_322469551.1 PAS domain S-box protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17729.84 Da        Isoelectric Point: 6.9856

>NTDB_id=911051 SOM08_RS19500 WP_322469549.1 4070887..4071384(+) (ssb) [Hydrogenophaga sp. SNF1]
MASVNKVILVGNCGRDAEIRYLPSGQAVANVSIATSSRRKDRNTGETVEETQWHRVTFYDRLAEIAGEYVKKGRPLYVEG
RLKYGKYTDQGGVERNTVDIIATEMQLLGGREGMGGGDDGGAPPRAAAAPRAAAPTSRPAPSPRPAPAPVRQPTGFDDMD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=911051 SOM08_RS19500 WP_322469549.1 4070887..4071384(+) (ssb) [Hydrogenophaga sp. SNF1]
ATGGCATCCGTCAACAAAGTCATCCTCGTGGGCAACTGCGGCCGCGACGCCGAGATCCGCTACCTGCCCTCCGGCCAGGC
CGTGGCCAACGTGAGCATCGCCACCTCCAGCCGCCGCAAGGACCGCAACACCGGCGAGACCGTGGAAGAGACGCAGTGGC
ACCGCGTGACCTTCTACGACCGCCTCGCCGAAATCGCGGGCGAGTACGTCAAGAAGGGCCGCCCGCTGTACGTCGAAGGG
CGCCTGAAGTACGGCAAGTACACCGACCAGGGCGGCGTCGAGCGCAACACCGTGGACATCATCGCGACCGAGATGCAGTT
GCTCGGCGGCCGTGAAGGCATGGGCGGTGGCGACGACGGCGGCGCCCCGCCGCGCGCCGCCGCCGCGCCCCGAGCGGCGG
CGCCCACCAGCCGCCCGGCCCCGTCGCCGCGCCCCGCCCCCGCACCGGTGCGCCAGCCCACGGGCTTCGACGACATGGAC
GACGACATCCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

49.425

100

0.521
  ssb Neisseria meningitidis MC58

49.425

100

0.521
  ssb Vibrio cholerae strain A1552

45.198

100

0.485
  ssb Glaesserella parasuis strain SC1401

41.53

100

0.461