Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HX0037_RS11945 Genome accession   NZ_CP139782
Coordinates   2476078..2476767 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2471078..2481767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS11925 - 2471622..2472698 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  HX0037_RS11930 - 2472788..2473963 (-) 1176 WP_071392366.1 LCP family protein -
  HX0037_RS11935 - 2473968..2474615 (-) 648 WP_060657503.1 YigZ family protein -
  HX0037_RS11940 degS 2474838..2476001 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  HX0037_RS11945 degU 2476078..2476767 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HX0037_RS11950 - 2476865..2477713 (+) 849 WP_003151387.1 DegV family protein -
  HX0037_RS11955 comFA 2477821..2479206 (+) 1386 WP_094247454.1 DEAD/DEAH box helicase Machinery gene
  HX0037_RS11960 - 2479264..2479548 (+) 285 WP_017418816.1 late competence development ComFB family protein -
  HX0037_RS11965 comFC 2479554..2480243 (+) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  HX0037_RS11970 - 2480317..2480736 (+) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  HX0037_RS11975 flgM 2480806..2481072 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HX0037_RS11980 - 2481087..2481569 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=910981 HX0037_RS11945 WP_003219701.1 2476078..2476767(+) (degU) [Bacillus amyloliquefaciens strain HX0037]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=910981 HX0037_RS11945 WP_003219701.1 2476078..2476767(+) (degU) [Bacillus amyloliquefaciens strain HX0037]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1