Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HX0037_RS11965 Genome accession   NZ_CP139782
Coordinates   2479554..2480243 (+) Length   229 a.a.
NCBI ID   WP_202980098.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2474554..2485243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS11940 degS 2474838..2476001 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  HX0037_RS11945 degU 2476078..2476767 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HX0037_RS11950 - 2476865..2477713 (+) 849 WP_003151387.1 DegV family protein -
  HX0037_RS11955 comFA 2477821..2479206 (+) 1386 WP_094247454.1 DEAD/DEAH box helicase Machinery gene
  HX0037_RS11960 - 2479264..2479548 (+) 285 WP_017418816.1 late competence development ComFB family protein -
  HX0037_RS11965 comFC 2479554..2480243 (+) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  HX0037_RS11970 - 2480317..2480736 (+) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  HX0037_RS11975 flgM 2480806..2481072 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HX0037_RS11980 - 2481087..2481569 (+) 483 WP_003151394.1 flagellar protein FlgN -
  HX0037_RS11985 flgK 2481585..2483102 (+) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  HX0037_RS11990 flgL 2483114..2484031 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  HX0037_RS11995 - 2484122..2484691 (+) 570 WP_003151397.1 DUF6470 family protein -
  HX0037_RS12000 fliW 2484721..2485152 (+) 432 WP_060657507.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25273.98 Da        Isoelectric Point: 8.4880

>NTDB_id=910983 HX0037_RS11965 WP_202980098.1 2479554..2480243(+) (comFC) [Bacillus amyloliquefaciens strain HX0037]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCTICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=910983 HX0037_RS11965 WP_202980098.1 2479554..2480243(+) (comFC) [Bacillus amyloliquefaciens strain HX0037]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCACTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603