Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AABK36_RS18050 Genome accession   NZ_AP025305
Coordinates   4295810..4296295 (+) Length   161 a.a.
NCBI ID   WP_309936541.1    Uniprot ID   A0AAE3XJ55
Organism   Aureibacter tunicatorum strain NBRC 107587     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4290810..4301295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK36_RS18030 (AUTU_35750) - 4291606..4293156 (-) 1551 WP_309936537.1 Rne/Rng family ribonuclease -
  AABK36_RS18035 (AUTU_35760) - 4293368..4294216 (-) 849 WP_309936538.1 tetratricopeptide repeat protein -
  AABK36_RS18040 (AUTU_35770) - 4294270..4294563 (-) 294 WP_309936539.1 HU family DNA-binding protein -
  AABK36_RS18045 (AUTU_35780) mutY 4294694..4295794 (+) 1101 WP_309936540.1 A/G-specific adenine glycosylase -
  AABK36_RS18050 (AUTU_35790) ssb 4295810..4296295 (+) 486 WP_309936541.1 single-stranded DNA-binding protein Machinery gene
  AABK36_RS18055 (AUTU_35800) gldE 4296444..4297790 (+) 1347 WP_309936542.1 gliding motility-associated protein GldE -
  AABK36_RS18060 (AUTU_35810) gldD 4297935..4298546 (+) 612 WP_309936543.1 gliding motility lipoprotein GldD -
  AABK36_RS18065 (AUTU_35820) recG 4298622..4300724 (+) 2103 WP_309936545.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17833.74 Da        Isoelectric Point: 5.2420

>NTDB_id=91082 AABK36_RS18050 WP_309936541.1 4295810..4296295(+) (ssb) [Aureibacter tunicatorum strain NBRC 107587]
MAGVNKVILVGNLGRDPEIRHLENGTPVANFTLATSESYTDRNTKERKTTTEWHNIVLWRGLAEIAEKYLRKGNSVYIEG
KITTRSYQDQQGVTKYITEIVGQNMTMLGGAQRNDNAGNGYPAQQPANQQVNSPQAQPMASKQETPASVDFSSDETDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=91082 AABK36_RS18050 WP_309936541.1 4295810..4296295(+) (ssb) [Aureibacter tunicatorum strain NBRC 107587]
ATGGCAGGAGTAAATAAAGTAATTCTAGTCGGCAACCTAGGAAGAGATCCTGAAATCAGACATCTAGAAAACGGAACGCC
AGTAGCCAACTTCACTCTAGCGACATCCGAATCTTATACCGACCGCAATACTAAAGAAAGAAAAACAACAACTGAATGGC
ACAACATTGTACTTTGGAGAGGCTTGGCTGAAATCGCTGAGAAATACCTTAGAAAGGGCAACAGCGTGTATATAGAAGGA
AAAATCACTACAAGATCTTACCAAGATCAACAAGGTGTAACGAAATATATTACTGAAATCGTAGGCCAAAACATGACTAT
GCTCGGTGGAGCTCAAAGAAACGACAACGCCGGCAATGGCTACCCTGCTCAACAACCAGCAAACCAGCAAGTCAACTCGC
CTCAAGCCCAACCTATGGCTAGCAAGCAAGAGACTCCTGCTTCGGTTGACTTTTCTTCTGACGAAACGGATGATTTGCCA
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.555

100

0.522
  ssb Glaesserella parasuis strain SC1401

43.478

100

0.497
  ssb Neisseria meningitidis MC58

45.143

100

0.491
  ssb Neisseria gonorrhoeae MS11

45.143

100

0.491

Multiple sequence alignment