Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABU963_RS19530 Genome accession   NZ_CP159137
Coordinates   3699620..3700156 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 158274-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3694620..3705156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU963_RS19510 (ABU963_19505) aphA 3694909..3695622 (+) 714 WP_001317548.1 acid phosphatase AphA -
  ABU963_RS19515 (ABU963_19510) yjbQ 3695733..3696149 (+) 417 WP_000270383.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABU963_RS19520 (ABU963_19515) yjbR 3696153..3696509 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ABU963_RS19525 (ABU963_19520) uvrA 3696544..3699366 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  ABU963_RS19530 (ABU963_19525) ssb 3699620..3700156 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABU963_RS19535 (ABU963_19530) yjcB 3700255..3700536 (-) 282 WP_001295689.1 YjcB family protein -
  ABU963_RS19540 (ABU963_19535) pdeC 3700966..3702552 (+) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  ABU963_RS19545 (ABU963_19540) soxS 3702555..3702878 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ABU963_RS19550 (ABU963_19545) soxR 3702964..3703428 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=910782 ABU963_RS19530 WP_000168305.1 3699620..3700156(+) (ssb) [Escherichia coli strain 158274-3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=910782 ABU963_RS19530 WP_000168305.1 3699620..3700156(+) (ssb) [Escherichia coli strain 158274-3]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489