Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   T7987_RS10615 Genome accession   NZ_CP139725
Coordinates   2112018..2112536 (+) Length   172 a.a.
NCBI ID   WP_322327860.1    Uniprot ID   -
Organism   Sulfitobacter faviae strain OXR-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2107018..2117536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T7987_RS10600 (T7987_10600) - 2108287..2110377 (+) 2091 WP_322327859.1 ABC transporter ATP-binding protein -
  T7987_RS10605 (T7987_10605) - 2110484..2111011 (-) 528 WP_209218906.1 hypothetical protein -
  T7987_RS10610 (T7987_10610) - 2111192..2111737 (-) 546 WP_322329708.1 lytic transglycosylase domain-containing protein -
  T7987_RS10615 (T7987_10615) ssb 2112018..2112536 (+) 519 WP_322327860.1 single-stranded DNA-binding protein Machinery gene
  T7987_RS10620 (T7987_10620) aroB 2112883..2113989 (-) 1107 WP_322327861.1 3-dehydroquinate synthase -
  T7987_RS10625 (T7987_10625) - 2113982..2114578 (-) 597 WP_322327862.1 shikimate kinase -
  T7987_RS10630 (T7987_10630) - 2114659..2114808 (+) 150 WP_007120408.1 hypothetical protein -
  T7987_RS10635 (T7987_10635) - 2114814..2116460 (+) 1647 WP_322327863.1 hypothetical protein -
  T7987_RS10640 (T7987_10640) - 2116457..2117440 (+) 984 WP_136720301.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 17660.22 Da        Isoelectric Point: 5.2704

>NTDB_id=910762 T7987_RS10615 WP_322327860.1 2112018..2112536(+) (ssb) [Sulfitobacter faviae strain OXR-9]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRVAEQYLKKGSKVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFGGTLTMLDGPGGGSGGGGGGGGYGGGGGGGYGGGGNDYGGGYDSGPSSSGGGG
GGSRDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=910762 T7987_RS10615 WP_322327860.1 2112018..2112536(+) (ssb) [Sulfitobacter faviae strain OXR-9]
ATGGCCGGCTCAGTGAACAAAGTGATCCTTATCGGCAACCTCGGGCGCGACCCCGAGGTGCGGTCGTTCCAGAACGGCGG
CAAAGTGTGCAACCTGCGCATTGCCACCTCGGAGACATGGAAAGACCGCAACACCGGTGAGCGCCGCGAGAAGACCGAAT
GGCATTCGGTGGCGATCTTTCAAGAAGGGCTCGTCCGCGTGGCCGAGCAATACCTCAAGAAGGGCTCCAAAGTGTATATC
GAAGGCCAGTTGCAGACCCGCAAATGGCAGGACCAATCGGGCGCAGACCGCTATAGCACCGAAGTCGTGCTGCAAGGCTT
TGGCGGCACGCTGACCATGCTCGACGGTCCCGGCGGCGGCTCCGGCGGCGGCGGTGGTGGCGGCGGCTACGGTGGTGGCG
GCGGTGGCGGCTACGGCGGTGGCGGCAATGACTACGGCGGTGGCTATGACAGCGGCCCGTCCTCTTCGGGCGGCGGCGGC
GGCGGCAGCCGTGACCTCGATGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.179

100

0.535
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.5
  ssb Neisseria gonorrhoeae MS11

41.667

100

0.436
  ssb Neisseria meningitidis MC58

41.667

100

0.436