Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AABK40_RS00830 Genome accession   NZ_AP025292
Coordinates   200682..201170 (-) Length   162 a.a.
NCBI ID   WP_338397402.1    Uniprot ID   -
Organism   Persicobacter psychrovividus strain NBRC 101262     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 195682..206170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK40_RS00815 (PEPS_01690) recG 196460..198556 (-) 2097 WP_338398069.1 ATP-dependent DNA helicase RecG -
  AABK40_RS00820 (PEPS_01700) - 198581..199162 (-) 582 WP_332922157.1 gliding motility lipoprotein GldD -
  AABK40_RS00825 (PEPS_01710) gldE 199172..200536 (-) 1365 WP_332922156.1 gliding motility-associated protein GldE -
  AABK40_RS00830 (PEPS_01720) ssb 200682..201170 (-) 489 WP_338397402.1 single-stranded DNA-binding protein Machinery gene
  AABK40_RS00835 (PEPS_01730) mutY 201323..202396 (-) 1074 WP_338397403.1 A/G-specific adenine glycosylase -
  AABK40_RS00840 (PEPS_01740) - 202561..202854 (+) 294 WP_053406260.1 HU family DNA-binding protein -
  AABK40_RS00845 (PEPS_01750) - 202920..203771 (+) 852 WP_338397404.1 tetratricopeptide repeat protein -
  AABK40_RS00850 (PEPS_01760) - 203990..205543 (+) 1554 WP_332922152.1 Rne/Rng family ribonuclease -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17848.86 Da        Isoelectric Point: 5.7121

>NTDB_id=91069 AABK40_RS00830 WP_338397402.1 200682..201170(-) (ssb) [Persicobacter psychrovividus strain NBRC 101262]
MINKAIILGNLGADPEVRHLENGVSVATINVATTETYKDRNTGERVSNTEWHRIVLWRGLADVAEKYLKKGDQVYIEGKI
ETRQYQDQAGVTKYTTEIVGRELKMLGSRRDRDQSANPQQAAAPQAQPQVTHAQQNATVEDPLKAPANAAPANSPADDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=91069 AABK40_RS00830 WP_338397402.1 200682..201170(-) (ssb) [Persicobacter psychrovividus strain NBRC 101262]
ATGATTAACAAAGCGATAATTCTCGGTAATCTTGGTGCTGATCCTGAAGTACGCCACCTTGAAAATGGCGTAAGTGTAGC
CACCATTAATGTAGCCACCACAGAAACCTATAAGGACAGAAACACCGGTGAACGCGTCTCCAACACCGAATGGCACCGCA
TCGTTCTTTGGAGAGGCCTGGCGGATGTGGCTGAAAAGTACCTCAAAAAAGGTGATCAGGTTTATATTGAAGGAAAAATT
GAAACACGTCAATACCAGGATCAGGCAGGAGTTACCAAATACACCACTGAAATTGTAGGGCGAGAATTGAAAATGCTGGG
CTCACGCCGAGACCGAGATCAAAGTGCAAACCCTCAGCAGGCAGCAGCACCGCAAGCTCAGCCACAGGTAACCCACGCAC
AGCAAAACGCAACTGTGGAAGATCCATTAAAGGCACCAGCAAATGCTGCACCGGCAAACAGCCCCGCCGACGACGATCTC
CCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.198

100

0.494
  ssb Vibrio cholerae strain A1552

43.103

100

0.463
  ssb Neisseria meningitidis MC58

41.954

100

0.451
  ssb Neisseria gonorrhoeae MS11

41.954

100

0.451

Multiple sequence alignment