Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   T8T98_RS02295 Genome accession   NZ_CP139719
Coordinates   496449..496997 (+) Length   182 a.a.
NCBI ID   WP_251104198.1    Uniprot ID   -
Organism   Pelagerythrobacter marinus strain OXR-96     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 491449..501997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T8T98_RS02270 (T8T98_02270) - 492819..494276 (+) 1458 WP_251104200.1 leucyl aminopeptidase -
  T8T98_RS02275 (T8T98_02275) - 494287..494730 (+) 444 WP_160732018.1 DNA polymerase III subunit chi -
  T8T98_RS02280 (T8T98_02280) - 494772..495269 (+) 498 WP_251104199.1 hypothetical protein -
  T8T98_RS02285 (T8T98_02285) ndk 495363..495785 (+) 423 WP_160732020.1 nucleoside-diphosphate kinase -
  T8T98_RS02290 (T8T98_02290) - 495917..496327 (+) 411 WP_160732021.1 nuclear transport factor 2 family protein -
  T8T98_RS02295 (T8T98_02295) ssb 496449..496997 (+) 549 WP_251104198.1 single-stranded DNA-binding protein Machinery gene
  T8T98_RS02300 (T8T98_02300) - 497025..497543 (-) 519 WP_251104197.1 DUF177 domain-containing protein -
  T8T98_RS02305 (T8T98_02305) - 497540..498058 (-) 519 WP_251104196.1 ubiquinol-cytochrome C chaperone family protein -
  T8T98_RS02310 (T8T98_02310) - 498225..498692 (+) 468 WP_237486649.1 outer membrane protein assembly factor BamE -
  T8T98_RS02315 (T8T98_02315) hslV 498741..499301 (+) 561 WP_160732025.1 ATP-dependent protease subunit HslV -
  T8T98_RS02320 (T8T98_02320) hslU 499329..500630 (+) 1302 WP_160732026.1 ATP-dependent protease ATPase subunit HslU -
  T8T98_RS02325 (T8T98_02325) - 500630..501034 (+) 405 WP_251104195.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 18746.29 Da        Isoelectric Point: 4.9561

>NTDB_id=910688 T8T98_RS02295 WP_251104198.1 496449..496997(+) (ssb) [Pelagerythrobacter marinus strain OXR-96]
MAGSLNKVMLIGNLGADPEVREFQNGGAVCNLRIATSEQWKDRNTGERQERTEWHSVAIFSEGLINVAKNYLRKGSKVYV
EGQLQTRKWQDQNGQDRYSTEVVLRGFNGTLTMLDGAPGGGGGGQRGGGGAGGWNQGGGGNDGGWNQGGGGPGGGGQGGG
GQGGAGSRGGANYDDLDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=910688 T8T98_RS02295 WP_251104198.1 496449..496997(+) (ssb) [Pelagerythrobacter marinus strain OXR-96]
ATGGCGGGCAGCCTCAACAAAGTCATGCTGATCGGCAATCTCGGCGCCGATCCCGAAGTGCGCGAGTTCCAGAACGGCGG
CGCGGTGTGCAACTTGCGCATTGCGACCAGCGAACAGTGGAAGGATCGCAATACCGGCGAGCGCCAGGAACGGACCGAGT
GGCATAGCGTCGCGATCTTTTCCGAAGGGCTGATCAACGTCGCAAAGAACTACCTGCGCAAAGGGTCCAAGGTCTATGTC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGAACGGGCAGGATCGCTATTCGACCGAAGTCGTCCTGCGCGGCTT
CAACGGCACGCTGACAATGCTCGACGGCGCGCCCGGCGGCGGTGGCGGCGGCCAGCGTGGCGGCGGCGGTGCCGGCGGCT
GGAACCAGGGCGGCGGCGGCAACGACGGCGGCTGGAACCAGGGTGGCGGCGGCCCGGGCGGTGGCGGCCAGGGCGGCGGG
GGCCAGGGCGGCGCGGGATCGCGTGGCGGCGCCAACTACGACGATCTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.955

98.352

0.511
  ssb Glaesserella parasuis strain SC1401

46.561

100

0.484
  ssb Neisseria gonorrhoeae MS11

39.037

100

0.401
  ssb Neisseria meningitidis MC58

39.037

100

0.401