Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU49_RS02360 Genome accession   NZ_AP025282
Coordinates   541895..542491 (+) Length   198 a.a.
NCBI ID   WP_261843429.1    Uniprot ID   -
Organism   Aliamphritea ceti strain KCTC 42154     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 536895..547491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU49_RS02345 - 537095..538033 (+) 939 WP_261843426.1 fatty acid desaturase -
  OCU49_RS02350 - 538030..538830 (+) 801 WP_261843427.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  OCU49_RS02355 uvrA 538848..541670 (-) 2823 WP_261843428.1 excinuclease ABC subunit UvrA -
  OCU49_RS02360 ssb 541895..542491 (+) 597 WP_261843429.1 single-stranded DNA-binding protein Machinery gene
  OCU49_RS02365 rfbD 542530..543462 (+) 933 WP_261843430.1 dTDP-4-dehydrorhamnose reductase -
  OCU49_RS02370 - 543517..543891 (-) 375 WP_261843431.1 SirB2 family protein -
  OCU49_RS02375 moaA 544061..545065 (+) 1005 WP_261843432.1 GTP 3',8-cyclase MoaA -
  OCU49_RS23750 - 545299..545535 (-) 237 WP_376787887.1 AsnC family transcriptional regulator -
  OCU49_RS02380 - 545656..546558 (+) 903 WP_261843433.1 DMT family transporter -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22339.40 Da        Isoelectric Point: 4.9464

>NTDB_id=91011 OCU49_RS02360 WP_261843429.1 541895..542491(+) (ssb) [Aliamphritea ceti strain KCTC 42154]
MARGINKVILIGNLGNDPDTKYMPSGNAVTNITVATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGSKVYLE
GSLRTRKWQGQDGQDRYTTEIVASEMQMLDGRGGDNNGGYQQSQGGGFQQQAPQQQAPQQQYQQAPQQQQQQAPQQYQQQ
APQQQQAPQQQYQKPPQQQAPAPQPAPGMDDFDDDIPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=91011 OCU49_RS02360 WP_261843429.1 541895..542491(+) (ssb) [Aliamphritea ceti strain KCTC 42154]
ATGGCACGCGGTATTAACAAAGTCATTCTGATTGGTAACCTGGGTAACGATCCGGATACTAAATATATGCCCAGCGGCAA
TGCCGTAACTAATATCACTGTAGCGACTTCAGAAAGCTGGAAAGACAAGCAAACTGGTCAGCAGCAGGAACGTACGGAAT
GGCACCGTGTAGTGTTTTTTAACCGGTTGGCTGAAATCGCCGGTGAATACCTGCGCAAAGGTTCTAAGGTGTATTTGGAA
GGTTCGTTGCGTACCCGGAAGTGGCAGGGGCAGGACGGACAGGATCGTTACACAACTGAGATCGTTGCCAGCGAAATGCA
AATGCTGGATGGTCGCGGCGGTGATAATAACGGCGGGTACCAGCAGTCACAGGGCGGTGGTTTCCAGCAGCAAGCACCAC
AGCAGCAGGCACCTCAGCAGCAATATCAGCAGGCGCCACAGCAACAACAGCAACAAGCTCCACAACAATATCAGCAGCAG
GCGCCTCAGCAACAACAGGCTCCTCAGCAGCAGTACCAGAAGCCGCCTCAGCAGCAAGCACCAGCTCCACAGCCTGCGCC
GGGTATGGATGATTTCGACGACGATATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.726

100

0.556
  ssb Glaesserella parasuis strain SC1401

53.299

99.495

0.53
  ssb Neisseria gonorrhoeae MS11

48.454

97.98

0.475
  ssb Neisseria meningitidis MC58

47.938

97.98

0.47

Multiple sequence alignment