Detailed information NTG0909960

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: SOJ49_RS12760
• Genome accession: NZ_CP139482
• Coordinates: 2873832..2874995 (-)
• Length: 387 a.a.
• NCBI ID: WP_369854885.1
• Uniprot ID: -
• Organism: Candidatus Thalassolituus haligoni strain BB40
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2868832..2879995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOJ49_RS12740	-	2869648..2870769 (-)	1122	WP_369854881.1	DNA alkylation repair protein	-
SOJ49_RS12745	pgm	2871014..2872660 (+)	1647	WP_369854882.1	phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)	-
SOJ49_RS12750	cowN	2872716..2873045 (-)	330	WP_369854883.1	N(2)-fixation sustaining protein CowN	-
SOJ49_RS12755	-	2873183..2873851 (-)	669	WP_369854884.1	Crp/Fnr family transcriptional regulator	-
SOJ49_RS12760	pilU	2873832..2874995 (-)	1164	WP_369854885.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
SOJ49_RS12765	-	2875293..2875598 (+)	306	WP_369854886.1	antibiotic biosynthesis monooxygenase	-
SOJ49_RS12770	-	2875669..2876883 (-)	1215	WP_369858064.1	ammonium transporter	-
SOJ49_RS12775	rlmKL	2877349..2879562 (-)	2214	WP_369854887.1	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	-
SOJ49_RS12780	rmf	2879741..2879938 (+)	198	WP_369854888.1	ribosome modulation factor	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 42865.19 Da
• Isoelectric Point: 6.1946

>NTDB_id=909960 SOJ49_RS12760 WP_369854885.1 2873832..2874995(-) (pilU) [Candidatus Thalassolituus haligoni strain BB40]
MSMEAWLNILSHKDGSDLYLSTGAPPCAKFQGQLRPLSKDPLGPGDVEEIAKSLMTDAQKKEFAEEMEMNLAISNSAGRF
RINIFKQRHEVSIVARNINTEIPNLDKLKLPPILKDVVLSKRGLILFVGGTGSGKSTSLAALIDHRNASAGGHIITIEDP
VEFVHKHKKCIVNQREVGTDTKSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFAETGHLAISTLHANNANQALERII
NMFPEERRPQLLMGLGQNLRAFVSQRLIPTSDGKRCAAVEVMLGTKTIEDMIMRGDFPSIKEVMEKSENLGMQTFDAAMF
NLYREGRITLDDALKNADSANNLRLRIKLAENGGSMANEEKIGTDGKPMMEFSLMEDKVLEDGDENF

Nucleotide

• Length: 1164 bp

>NTDB_id=909960 SOJ49_RS12760 WP_369854885.1 2873832..2874995(-) (pilU) [Candidatus Thalassolituus haligoni strain BB40]
ATGAGTATGGAAGCCTGGCTGAATATTTTGTCCCATAAAGATGGTTCTGATTTGTACCTCAGTACCGGAGCACCGCCTTG
TGCCAAATTTCAGGGGCAATTACGTCCATTGTCGAAGGATCCGCTGGGTCCCGGTGACGTTGAAGAAATAGCCAAATCGC
TGATGACAGATGCACAAAAAAAAGAATTTGCCGAAGAAATGGAAATGAATCTGGCGATTTCGAACAGTGCTGGCCGATTC
CGGATCAATATTTTCAAACAACGCCACGAAGTGTCGATTGTGGCGCGTAATATCAACACCGAAATTCCTAATCTCGACAA
GCTGAAGCTGCCGCCTATTCTGAAAGACGTGGTGTTGTCCAAGCGTGGTCTGATCCTGTTTGTGGGTGGTACTGGTTCGG
GTAAGTCGACCTCGCTGGCAGCCTTGATTGATCACCGGAATGCCAGCGCTGGTGGTCATATCATTACCATCGAAGACCCG
GTGGAATTTGTCCACAAGCACAAAAAATGTATTGTTAATCAACGTGAAGTCGGCACCGATACCAAAAGTTTCCATGCCGC
CCTTAAAAATACCCTGCGCCAGGCCCCGGATGTAATTTTGATTGGTGAGATTCGGGATCGGGAAACGATGGAACATGCGT
TAGCCTTTGCAGAAACCGGTCACCTGGCGATTTCTACCCTGCACGCCAACAACGCCAACCAGGCGCTGGAGCGGATCATC
AATATGTTTCCGGAAGAACGTCGTCCGCAGCTGTTGATGGGGCTGGGGCAGAACCTGAGGGCATTTGTGTCACAGCGGTT
GATTCCTACTTCGGATGGTAAGCGCTGTGCGGCGGTAGAAGTCATGTTGGGCACCAAAACCATCGAAGATATGATTATGC
GGGGCGACTTCCCGAGCATTAAAGAAGTCATGGAGAAGTCTGAAAACCTCGGGATGCAAACCTTCGATGCCGCGATGTTT
AATCTCTACCGCGAAGGGCGTATTACATTGGATGACGCGTTAAAAAACGCTGATTCAGCGAATAATTTACGCTTACGGAT
CAAGTTGGCCGAAAACGGTGGTTCGATGGCGAATGAAGAGAAAATCGGGACGGATGGTAAGCCCATGATGGAATTCAGTT
TGATGGAAGACAAGGTGCTGGAGGATGGTGACGAAAATTTCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (52-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	52.196	100	0.522
pilU	Pseudomonas stutzeri DSM 10701	55.398	90.956	0.504
pilU	Vibrio cholerae strain A1552	50	90.439	0.452
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.042	86.047	0.362