Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SR933_RS04290 | Genome accession | NZ_CP139472 |
| Coordinates | 876758..877267 (+) | Length | 169 a.a. |
| NCBI ID | WP_013331866.1 | Uniprot ID | E1VAE8 |
| Organism | Halomonas elongata DSM 2581 strain ATCC 33173 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 845688..885068 | 876758..877267 | within | 0 |
Gene organization within MGE regions
Location: 845688..885068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SR933_RS04040 (SR933_04040) | - | 845688..846050 (-) | 363 | WP_013331832.1 | hypothetical protein | - |
| SR933_RS04045 (SR933_04045) | - | 846060..848570 (-) | 2511 | WP_013331833.1 | phage tail tape measure protein | - |
| SR933_RS04050 (SR933_04050) | - | 848659..848952 (-) | 294 | WP_041601943.1 | hypothetical protein | - |
| SR933_RS04055 (SR933_04055) | - | 849101..849388 (+) | 288 | WP_013331834.1 | type II toxin-antitoxin system HigB family toxin | - |
| SR933_RS04060 (SR933_04060) | - | 849392..849820 (+) | 429 | WP_013331835.1 | type II toxin-antitoxin system HigA family antitoxin | - |
| SR933_RS04065 (SR933_04065) | - | 849894..850082 (-) | 189 | WP_013331836.1 | hypothetical protein | - |
| SR933_RS04070 (SR933_04070) | - | 850190..850660 (-) | 471 | WP_013331837.1 | hypothetical protein | - |
| SR933_RS04075 (SR933_04075) | - | 850670..851605 (-) | 936 | WP_013331838.1 | phage tail tube protein | - |
| SR933_RS04080 (SR933_04080) | - | 851680..852057 (-) | 378 | WP_013331839.1 | DUF4128 domain-containing protein | - |
| SR933_RS04085 (SR933_04085) | - | 852054..852443 (-) | 390 | WP_013331840.1 | hypothetical protein | - |
| SR933_RS04090 (SR933_04090) | - | 852445..852825 (-) | 381 | WP_013331841.1 | hypothetical protein | - |
| SR933_RS04095 (SR933_04095) | - | 852812..853216 (-) | 405 | WP_013331842.1 | hypothetical protein | - |
| SR933_RS04100 (SR933_04100) | - | 853256..853489 (-) | 234 | WP_013331843.1 | hypothetical protein | - |
| SR933_RS04105 (SR933_04105) | - | 853492..854457 (-) | 966 | WP_013331844.1 | DUF2184 domain-containing protein | - |
| SR933_RS04110 (SR933_04110) | - | 854470..854883 (-) | 414 | WP_198410726.1 | hypothetical protein | - |
| SR933_RS04115 (SR933_04115) | - | 854892..855998 (-) | 1107 | WP_013331846.1 | DUF2213 domain-containing protein | - |
| SR933_RS04120 (SR933_04120) | - | 855995..856831 (-) | 837 | WP_013331847.1 | phage minor head protein | - |
| SR933_RS04125 (SR933_04125) | - | 856824..858068 (-) | 1245 | WP_013331848.1 | DUF1073 domain-containing protein | - |
| SR933_RS04130 (SR933_04130) | - | 858077..859672 (-) | 1596 | WP_013331849.1 | hypothetical protein | - |
| SR933_RS04135 (SR933_04135) | - | 859672..860262 (-) | 591 | WP_013331850.1 | terminase small subunit | - |
| SR933_RS04140 (SR933_04140) | - | 860892..861131 (-) | 240 | WP_041601944.1 | hypothetical protein | - |
| SR933_RS04145 (SR933_04145) | - | 861142..861456 (-) | 315 | WP_157953394.1 | hypothetical protein | - |
| SR933_RS04150 (SR933_04150) | - | 861453..862028 (-) | 576 | WP_041601946.1 | glycoside hydrolase family 108 protein | - |
| SR933_RS04155 (SR933_04155) | - | 862338..862967 (-) | 630 | WP_013331852.1 | hypothetical protein | - |
| SR933_RS04160 (SR933_04160) | - | 862960..863124 (-) | 165 | WP_157953395.1 | hypothetical protein | - |
| SR933_RS04165 (SR933_04165) | - | 863139..863537 (-) | 399 | WP_157953396.1 | hypothetical protein | - |
| SR933_RS04170 (SR933_04170) | - | 863534..863968 (-) | 435 | WP_013331854.1 | DUF968 domain-containing protein | - |
| SR933_RS04175 (SR933_04175) | - | 863965..864162 (-) | 198 | WP_041601948.1 | hypothetical protein | - |
| SR933_RS04180 (SR933_04180) | - | 864159..864665 (-) | 507 | WP_013331855.1 | hypothetical protein | - |
| SR933_RS04185 (SR933_04185) | - | 864662..865006 (-) | 345 | WP_041601949.1 | hypothetical protein | - |
| SR933_RS04190 (SR933_04190) | - | 865003..865212 (-) | 210 | WP_013331856.1 | hypothetical protein | - |
| SR933_RS04195 (SR933_04195) | - | 865209..865472 (-) | 264 | WP_041601950.1 | hypothetical protein | - |
| SR933_RS04200 (SR933_04200) | - | 865469..866203 (-) | 735 | WP_013331857.1 | hypothetical protein | - |
| SR933_RS04205 (SR933_04205) | - | 866207..867157 (-) | 951 | WP_013331858.1 | helix-turn-helix domain-containing protein | - |
| SR933_RS04210 (SR933_04210) | - | 867154..867942 (-) | 789 | WP_013331859.1 | BRO family protein | - |
| SR933_RS04215 (SR933_04215) | - | 868016..868474 (-) | 459 | WP_013331860.1 | phage regulatory CII family protein | - |
| SR933_RS04220 (SR933_04220) | - | 868540..868737 (-) | 198 | WP_041601951.1 | helix-turn-helix domain-containing protein | - |
| SR933_RS04225 (SR933_04225) | - | 868846..869538 (+) | 693 | WP_162301210.1 | S24 family peptidase | - |
| SR933_RS04230 (SR933_04230) | - | 869611..870339 (+) | 729 | WP_174208840.1 | zeta toxin family protein | - |
| SR933_RS04235 (SR933_04235) | - | 870345..870518 (+) | 174 | WP_174208841.1 | hypothetical protein | - |
| SR933_RS04240 (SR933_04240) | - | 871568..871960 (+) | 393 | WP_041601952.1 | hypothetical protein | - |
| SR933_RS04245 (SR933_04245) | - | 871957..872238 (-) | 282 | WP_041601953.1 | hypothetical protein | - |
| SR933_RS04250 (SR933_04250) | - | 872488..872703 (+) | 216 | WP_049786195.1 | hypothetical protein | - |
| SR933_RS04255 (SR933_04255) | - | 872715..872870 (+) | 156 | WP_157953397.1 | hypothetical protein | - |
| SR933_RS04260 (SR933_04260) | - | 873157..873366 (+) | 210 | WP_041601955.1 | hypothetical protein | - |
| SR933_RS04265 (SR933_04265) | - | 873371..873571 (+) | 201 | WP_013331862.1 | hypothetical protein | - |
| SR933_RS04270 (SR933_04270) | - | 873568..873897 (+) | 330 | WP_041601956.1 | hypothetical protein | - |
| SR933_RS04275 (SR933_04275) | - | 874112..874897 (+) | 786 | WP_013331863.1 | Rad52/Rad22 family DNA repair protein | - |
| SR933_RS04280 (SR933_04280) | - | 874890..875774 (+) | 885 | WP_013331864.1 | hypothetical protein | - |
| SR933_RS04285 (SR933_04285) | - | 875814..876749 (+) | 936 | WP_013331865.1 | recombination-associated protein RdgC | - |
| SR933_RS04290 (SR933_04290) | ssb | 876758..877267 (+) | 510 | WP_013331866.1 | single-stranded DNA-binding protein | Machinery gene |
| SR933_RS04295 (SR933_04295) | - | 877588..878178 (+) | 591 | WP_157953398.1 | hypothetical protein | - |
| SR933_RS04300 (SR933_04300) | - | 878286..878585 (-) | 300 | WP_041601957.1 | hypothetical protein | - |
| SR933_RS04305 (SR933_04305) | - | 878698..880269 (+) | 1572 | WP_013331867.1 | DNA cytosine methyltransferase | - |
| SR933_RS04310 (SR933_04310) | - | 880266..880541 (+) | 276 | WP_041601958.1 | hypothetical protein | - |
| SR933_RS04315 (SR933_04315) | - | 880538..881002 (+) | 465 | WP_013331868.1 | hypothetical protein | - |
| SR933_RS04320 (SR933_04320) | - | 881073..881468 (+) | 396 | WP_013331869.1 | hypothetical protein | - |
| SR933_RS04325 (SR933_04325) | - | 881461..881628 (+) | 168 | WP_157953399.1 | hypothetical protein | - |
| SR933_RS04330 (SR933_04330) | - | 881801..882346 (+) | 546 | WP_013331870.1 | HD domain-containing protein | - |
| SR933_RS04335 (SR933_04335) | - | 882410..882952 (+) | 543 | WP_013331871.1 | HNH endonuclease | - |
| SR933_RS04340 (SR933_04340) | - | 882969..883193 (+) | 225 | WP_041601960.1 | DUF4224 domain-containing protein | - |
| SR933_RS04345 (SR933_04345) | - | 883190..884200 (+) | 1011 | WP_013331872.1 | tyrosine-type recombinase/integrase | - |
| SR933_RS04350 (SR933_04350) | - | 884286..885068 (+) | 783 | WP_013331873.1 | class II glutamine amidotransferase | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 19196.27 Da Isoelectric Point: 7.2021
>NTDB_id=909916 SR933_RS04290 WP_013331866.1 876758..877267(+) (ssb) [Halomonas elongata DSM 2581 strain ATCC 33173]
MARGINKVILIGNVGQDPEIRFTQSGTPVGNINLATSDTWTDKQSGQRQERTEWHRLIVFRRLAEVAQQYVRKGSKLYVE
GRLQTRKWQDQSGQDRYVTEIIVNDLQMLDSRQGQPQGNAQAQQQPSQNGYFDQQRQYQQQQTAPPNPPGGGDFDDEIPF
APMHPLMGG
MARGINKVILIGNVGQDPEIRFTQSGTPVGNINLATSDTWTDKQSGQRQERTEWHRLIVFRRLAEVAQQYVRKGSKLYVE
GRLQTRKWQDQSGQDRYVTEIIVNDLQMLDSRQGQPQGNAQAQQQPSQNGYFDQQRQYQQQQTAPPNPPGGGDFDDEIPF
APMHPLMGG
Nucleotide
Download Length: 510 bp
>NTDB_id=909916 SR933_RS04290 WP_013331866.1 876758..877267(+) (ssb) [Halomonas elongata DSM 2581 strain ATCC 33173]
ATGGCCCGAGGCATCAACAAGGTCATCCTGATCGGCAACGTCGGCCAGGATCCCGAGATCCGCTTTACCCAGTCCGGTAC
GCCAGTCGGCAACATCAACCTCGCCACCAGTGACACCTGGACCGACAAGCAGAGCGGGCAGCGCCAGGAGCGCACGGAAT
GGCATCGCCTGATCGTCTTCCGCCGCCTTGCCGAGGTCGCGCAGCAGTACGTCCGCAAGGGATCGAAACTCTACGTCGAG
GGGCGACTGCAGACACGGAAGTGGCAAGACCAGAGCGGTCAGGATCGTTACGTCACGGAGATCATCGTCAACGATCTGCA
GATGCTCGACTCCCGGCAAGGGCAGCCACAGGGCAATGCCCAGGCTCAGCAGCAGCCCTCACAGAACGGCTACTTCGACC
AGCAACGGCAGTACCAGCAACAACAGACCGCGCCGCCGAATCCTCCTGGCGGGGGCGACTTCGACGACGAGATCCCATTC
GCTCCCATGCACCCGCTGATGGGCGGCTGA
ATGGCCCGAGGCATCAACAAGGTCATCCTGATCGGCAACGTCGGCCAGGATCCCGAGATCCGCTTTACCCAGTCCGGTAC
GCCAGTCGGCAACATCAACCTCGCCACCAGTGACACCTGGACCGACAAGCAGAGCGGGCAGCGCCAGGAGCGCACGGAAT
GGCATCGCCTGATCGTCTTCCGCCGCCTTGCCGAGGTCGCGCAGCAGTACGTCCGCAAGGGATCGAAACTCTACGTCGAG
GGGCGACTGCAGACACGGAAGTGGCAAGACCAGAGCGGTCAGGATCGTTACGTCACGGAGATCATCGTCAACGATCTGCA
GATGCTCGACTCCCGGCAAGGGCAGCCACAGGGCAATGCCCAGGCTCAGCAGCAGCCCTCACAGAACGGCTACTTCGACC
AGCAACGGCAGTACCAGCAACAACAGACCGCGCCGCCGAATCCTCCTGGCGGGGGCGACTTCGACGACGAGATCCCATTC
GCTCCCATGCACCCGCTGATGGGCGGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
50.847 |
100 |
0.533 |
| ssb | Glaesserella parasuis strain SC1401 |
48.876 |
100 |
0.515 |
| ssb | Neisseria meningitidis MC58 |
40.223 |
100 |
0.426 |
| ssb | Neisseria gonorrhoeae MS11 |
40.223 |
100 |
0.426 |