Detailed information NTG0909909

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: SLW62_RS21290
• Genome accession: NZ_CP139457
• Coordinates: 4381073..4381603 (-)
• Length: 176 a.a.
• NCBI ID: WP_000168322.1
• Uniprot ID: -
• Organism: Salmonella enterica strain XB08
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	4358660..4380855	4381073..4381603	flank	218

Gene organization within MGE regions

Location: 4358660..4381603

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SLW62_RS21215 (SLW62_21215)	siiC	4358660..4359979 (-)	1320	WP_023242873.1	SPI-4 type I secretion system protein SiiC	-
SLW62_RS21220 (SLW62_21220)	-	4359969..4361357 (-)	1389	WP_017441249.1	MotA/TolQ/ExbB proton channel family protein	-
SLW62_RS21225 (SLW62_21225)	siiA	4361354..4361986 (-)	633	WP_017441250.1	SPI-4 type I secretion system auxiliary protein SiiA	-
SLW62_RS21230 (SLW62_21230)	-	4363533..4366775 (-)	3243	WP_049246655.1	type I restriction endonuclease subunit R	-
SLW62_RS21235 (SLW62_21235)	-	4366788..4368176 (-)	1389	WP_080104680.1	DNA-processing protein DprA	-
SLW62_RS21240 (SLW62_21240)	-	4368173..4370305 (-)	2133	WP_080104679.1	RecQ family ATP-dependent DNA helicase	-
SLW62_RS21245 (SLW62_21245)	-	4370320..4371387 (-)	1068	WP_080104678.1	restriction endonuclease subunit S	-
SLW62_RS21250 (SLW62_21250)	-	4371384..4373525 (-)	2142	WP_080104677.1	N-6 DNA methylase	-
SLW62_RS21255 (SLW62_21255)	-	4373538..4373762 (-)	225	WP_001283160.1	helix-turn-helix domain-containing protein	-
SLW62_RS21260 (SLW62_21260)	-	4373860..4374411 (-)	552	WP_001136617.1	hypothetical protein	-
SLW62_RS21265 (SLW62_21265)	-	4374411..4375553 (-)	1143	WP_001172094.1	helix-turn-helix domain-containing protein	-
SLW62_RS21270 (SLW62_21270)	-	4375614..4376090 (-)	477	WP_000240784.1	hypothetical protein	-
SLW62_RS21275 (SLW62_21275)	-	4376083..4378092 (-)	2010	WP_080104676.1	integrase	-
SLW62_RS21280 (SLW62_21280)	-	4378085..4379683 (-)	1599	WP_198900947.1	site-specific integrase	-
SLW62_RS21285 (SLW62_21285)	-	4379680..4380855 (-)	1176	WP_034613846.1	tyrosine-type recombinase/integrase	-
SLW62_RS21290 (SLW62_21290)	ssb	4381073..4381603 (-)	531	WP_000168322.1	single-stranded DNA-binding protein SSB1	Machinery gene

Sequence

Protein

• Length: 176 a.a.
• Molecular weight: 19074.15 Da
• Isoelectric Point: 5.2456

>NTDB_id=909909 SLW62_RS21290 WP_000168322.1 4381073..4381603(-) (ssb) [Salmonella enterica strain XB08]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide

• Length: 531 bp

>NTDB_id=909909 SLW62_RS21290 WP_000168322.1 4381073..4381603(-) (ssb) [Salmonella enterica strain XB08]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCACCGGCAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AGCCGCAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-107)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	71.978	100	0.744
ssb	Glaesserella parasuis strain SC1401	60.109	100	0.625
ssb	Neisseria gonorrhoeae MS11	46.448	100	0.483
ssb	Neisseria meningitidis MC58	46.409	100	0.477