Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   R6Z04_RS22100 Genome accession   NZ_CP139440
Coordinates   4198610..4199128 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain GUCC4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4193610..4204128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Z04_RS22070 (R6Z04_22070) yyaJ 4194113..4195468 (+) 1356 WP_003243011.1 MFS transporter -
  R6Z04_RS22075 (R6Z04_22075) maa 4195502..4196056 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  R6Z04_RS22080 (R6Z04_22080) yyaH 4196074..4196454 (-) 381 WP_003244460.1 VOC family protein -
  R6Z04_RS22085 (R6Z04_22085) ccpB 4196510..4197445 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  R6Z04_RS22090 (R6Z04_22090) xth 4197504..4198262 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  R6Z04_RS22095 (R6Z04_22095) rpsR 4198327..4198566 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  R6Z04_RS22100 (R6Z04_22100) ssbA 4198610..4199128 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  R6Z04_RS22105 (R6Z04_22105) rpsF 4199169..4199456 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  R6Z04_RS22110 (R6Z04_22110) ychF 4199567..4200667 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  R6Z04_RS22115 (R6Z04_22115) yyaE 4200794..4202797 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  R6Z04_RS22120 (R6Z04_22120) yyzM 4202848..4203054 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=909827 R6Z04_RS22100 WP_003219228.1 4198610..4199128(-) (ssbA) [Bacillus subtilis strain GUCC4]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=909827 R6Z04_RS22100 WP_003219228.1 4198610..4199128(-) (ssbA) [Bacillus subtilis strain GUCC4]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378