Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SPM55_RS12765 Genome accession   NZ_CP139429
Coordinates   2763881..2764384 (+) Length   167 a.a.
NCBI ID   WP_272579164.1    Uniprot ID   -
Organism   Providencia rettgeri strain P50213     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2758881..2769384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPM55_RS12740 (SPM55_12740) - 2759732..2761117 (-) 1386 WP_272579029.1 DUF4055 domain-containing protein -
  SPM55_RS12745 (SPM55_12745) - 2761121..2761609 (-) 489 Protein_2500 terminase -
  SPM55_RS12750 (SPM55_12750) - 2761683..2762851 (+) 1169 WP_094963266.1 IS3 family transposase -
  SPM55_RS12755 (SPM55_12755) - 2762894..2763247 (+) 354 WP_272579166.1 hypothetical protein -
  SPM55_RS12760 (SPM55_12760) - 2763263..2763880 (+) 618 WP_272579165.1 ERF family protein -
  SPM55_RS12765 (SPM55_12765) ssb 2763881..2764384 (+) 504 WP_272579164.1 single-stranded DNA-binding protein Machinery gene
  SPM55_RS12770 (SPM55_12770) - 2764400..2764528 (+) 129 WP_272579163.1 hypothetical protein -
  SPM55_RS12775 (SPM55_12775) - 2764574..2765428 (+) 855 WP_272579162.1 hypothetical protein -
  SPM55_RS12780 (SPM55_12780) - 2765442..2765729 (+) 288 WP_272688541.1 antitoxin -
  SPM55_RS12785 (SPM55_12785) - 2765760..2766032 (+) 273 WP_272579108.1 hypothetical protein -
  SPM55_RS12790 (SPM55_12790) - 2766119..2766412 (+) 294 WP_272579107.1 hypothetical protein -
  SPM55_RS12795 (SPM55_12795) - 2766469..2767248 (+) 780 WP_272579106.1 hypothetical protein -
  SPM55_RS12800 (SPM55_12800) - 2767623..2767811 (+) 189 WP_272579105.1 lipoprotein -
  SPM55_RS12805 (SPM55_12805) - 2767866..2768072 (+) 207 WP_154633740.1 DUF4060 family protein -
  SPM55_RS12810 (SPM55_12810) xisR 2768285..2768521 (+) 237 WP_006659470.1 excisionase family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18451.77 Da        Isoelectric Point: 7.1327

>NTDB_id=909679 SPM55_RS12765 WP_272579164.1 2763881..2764384(+) (ssb) [Providencia rettgeri strain P50213]
MASKGVNKCILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQSGELKERVEWHRVCIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGNGGNQAGSQQPARQPQQPQQQAPQNEPPMDWNDNIPFAPIGLPYP
RHAIYVI

Nucleotide


Download         Length: 504 bp        

>NTDB_id=909679 SPM55_RS12765 WP_272579164.1 2763881..2764384(+) (ssb) [Providencia rettgeri strain P50213]
ATGGCAAGTAAAGGCGTGAATAAATGCATACTCATCGGAAATTTGGGACAAGACCCTGAAATACGCTACATGCCGAATGG
TGGCGCAGTAGCAAATCTTACACTAGCCACATCGGAATCGTGGCGTGATAAGCAATCAGGAGAACTGAAGGAGCGCGTTG
AATGGCATCGAGTGTGCATCTTCGGCAAGTTAGCTGAAGTTGCAGGTGAATATCTGAAAAAAGGCTCACAAGTCTATATC
GAAGGTTCTCTGCAAACCCGTAAATGGCAAGACCAGAGCGGTCAAGACCGATACACGACAGAAGTCGTTGTGAATATAGG
CGGCTCTATGCAAATGCTAGGCGGTAACGGTGGTAATCAGGCAGGAAGCCAGCAGCCAGCGAGACAACCTCAGCAACCAC
AGCAACAAGCGCCGCAGAATGAGCCGCCTATGGATTGGAATGACAATATTCCCTTCGCTCCTATCGGACTCCCCTACCCA
CGCCACGCTATTTATGTGATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.667

100

0.707
  ssb Glaesserella parasuis strain SC1401

50.829

100

0.551
  ssb Neisseria meningitidis MC58

43.182

100

0.455
  ssb Neisseria gonorrhoeae MS11

43.182

100

0.455