Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SPM55_RS02390 Genome accession   NZ_CP139429
Coordinates   566431..566952 (+) Length   173 a.a.
NCBI ID   WP_109912589.1    Uniprot ID   -
Organism   Providencia rettgeri strain P50213     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 561431..571952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPM55_RS02380 (SPM55_02380) - 561586..562782 (+) 1197 WP_272578953.1 amino acid aminotransferase -
  SPM55_RS02385 (SPM55_02385) uvrA 562862..565696 (-) 2835 WP_109912590.1 excinuclease ABC subunit UvrA -
  SPM55_RS02390 (SPM55_02390) ssb 566431..566952 (+) 522 WP_109912589.1 single-stranded DNA-binding protein Machinery gene
  SPM55_RS02395 (SPM55_02395) - 567227..567634 (-) 408 WP_272578954.1 helix-turn-helix domain-containing protein -
  SPM55_RS02400 (SPM55_02400) - 567874..569046 (-) 1173 WP_164528353.1 MFS transporter -
  SPM55_RS02405 (SPM55_02405) ivbL 569380..569469 (+) 90 WP_109912586.1 ilvB operon leader peptide IvbL -
  SPM55_RS02410 (SPM55_02410) ilvB 569573..571270 (+) 1698 WP_123382775.1 acetolactate synthase large subunit -
  SPM55_RS02415 (SPM55_02415) ilvN 571273..571557 (+) 285 WP_004914949.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18561.60 Da        Isoelectric Point: 4.9468

>NTDB_id=909668 SPM55_RS02390 WP_109912589.1 566431..566952(+) (ssb) [Providencia rettgeri strain P50213]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQGQGGQGGWGQPQQPQAAQQFSGGGAPAARPSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=909668 SPM55_RS02390 WP_109912589.1 566431..566952(+) (ssb) [Providencia rettgeri strain P50213]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGAGTCGTTATTTTCGGCAAACTTGCTGAAGTAGCAGGTGAATACCTAAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGTTATACGACAGAAGTTGTTGTGAATATCGG
TGGCTCAATGCAAATGTTAGGTGGCCGTGGTGGTGATGCACCATCACAAGGTCAAGGCGGTCAAGGTGGTTGGGGCCAAC
CACAGCAGCCTCAAGCGGCACAACAATTCAGTGGTGGTGGAGCGCCAGCCGCACGCCCATCAGCACCTGCACCACAAACC
AATGAACCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.613
  ssb Neisseria meningitidis MC58

46.927

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.474