Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SLW71_RS20135 Genome accession   NZ_CP139421
Coordinates   4992299..4992760 (-) Length   153 a.a.
NCBI ID   WP_320898932.1    Uniprot ID   -
Organism   Algoriphagus sp. NG3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4987299..4997760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLW71_RS20130 (SLW71_20130) gldE 4990879..4992228 (-) 1350 WP_320898931.1 gliding motility-associated protein GldE -
  SLW71_RS20135 (SLW71_20135) ssb 4992299..4992760 (-) 462 WP_320898932.1 single-stranded DNA-binding protein Machinery gene
  SLW71_RS20140 (SLW71_20140) mutY 4992806..4993879 (-) 1074 WP_320898933.1 A/G-specific adenine glycosylase -
  SLW71_RS20145 (SLW71_20145) - 4994025..4994333 (+) 309 WP_233755268.1 HU family DNA-binding protein -
  SLW71_RS20150 (SLW71_20150) - 4994352..4995179 (+) 828 WP_320898934.1 tetratricopeptide repeat protein -
  SLW71_RS20155 (SLW71_20155) - 4995362..4996933 (+) 1572 WP_320898935.1 Rne/Rng family ribonuclease -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16839.65 Da        Isoelectric Point: 4.8246

>NTDB_id=909591 SLW71_RS20135 WP_320898932.1 4992299..4992760(-) (ssb) [Algoriphagus sp. NG3]
MAGVNKVILVGNLGADPEVKYLEGDNAVANVSLATTEAYKNRNGERVEQTEWHDLEIWGAQAKIAEQYLKKGSQLYVEGK
IKTDKWQDEQGQNRYRTRIRVLSFTMLGGRPDGAGGQNSPQQSTQQKPASAAPTSAPKAQEMVSDTEDDDLPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=909591 SLW71_RS20135 WP_320898932.1 4992299..4992760(-) (ssb) [Algoriphagus sp. NG3]
ATGGCAGGAGTAAATAAAGTAATCCTAGTAGGCAATCTCGGGGCAGACCCGGAAGTAAAATATCTAGAAGGCGATAATGC
GGTAGCAAACGTTAGCCTGGCTACTACTGAAGCTTATAAAAACCGGAACGGCGAGCGGGTAGAGCAAACAGAATGGCATG
ATCTGGAAATATGGGGAGCACAGGCAAAAATCGCTGAACAATACCTCAAAAAAGGCAGCCAGCTCTACGTAGAAGGCAAG
ATCAAAACTGACAAGTGGCAGGACGAACAAGGCCAAAACCGCTACAGAACCAGAATCAGAGTGCTAAGCTTCACTATGCT
GGGAGGCAGACCTGATGGAGCTGGAGGCCAGAATTCTCCACAGCAATCCACTCAGCAAAAACCTGCTTCAGCCGCGCCTA
CTTCCGCACCAAAGGCACAGGAAATGGTATCAGATACAGAAGATGACGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.253

100

0.503
  ssb Neisseria meningitidis MC58

42.775

100

0.484
  ssb Glaesserella parasuis strain SC1401

41.111

100

0.484
  ssb Neisseria gonorrhoeae MS11

41.279

100

0.464