Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SM123_RS07915 Genome accession   NZ_CP139419
Coordinates   1651143..1651802 (+) Length   219 a.a.
NCBI ID   WP_320909391.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1646143..1656802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS07890 (SM123_07890) - 1647387..1647635 (-) 249 WP_024055332.1 DUF3165 family protein -
  SM123_RS07895 (SM123_07895) typA 1647659..1649506 (-) 1848 WP_003017941.1 translational GTPase TypA -
  SM123_RS07900 (SM123_07900) - 1649685..1650410 (+) 726 WP_320909390.1 16S rRNA pseudouridine(516) synthase -
  SM123_RS07905 (SM123_07905) - 1650454..1650837 (-) 384 WP_070666476.1 rhodanese-like domain-containing protein -
  SM123_RS07910 (SM123_07910) - 1650837..1651055 (-) 219 WP_003017930.1 YqgQ family protein -
  SM123_RS07915 (SM123_07915) cclA/cilC 1651143..1651802 (+) 660 WP_320909391.1 prepilin peptidase Machinery gene
  SM123_RS07920 (SM123_07920) trpB 1651810..1652997 (-) 1188 WP_003017923.1 tryptophan synthase subunit beta -
  SM123_RS07925 (SM123_07925) - 1653422..1653949 (-) 528 WP_257738707.1 VanZ family protein -
  SM123_RS07930 (SM123_07930) rlmN 1653936..1655024 (-) 1089 WP_003005918.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SM123_RS07935 (SM123_07935) - 1655031..1655606 (-) 576 WP_049507012.1 YutD-like domain-containing protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25076.22 Da        Isoelectric Point: 7.7576

>NTDB_id=909547 SM123_RS07915 WP_320909391.1 1651143..1651802(+) (cclA/cilC) [Streptococcus lingualis strain S5]
MINFYFFTIGTCIASFLGLVVDRFPNQSILAPRSHCDQCQHVLGVWDLIPIISQLLHRFRCRYCHQTYPFWYCLFEIWSG
LLFLACANGFLSLPQILTLLGAAVLAIYDLRFMEYPLFIWCCLHALVLFLSGSNLLMLIFLLLAIGAHFFFIGMGAGDFL
LLATFSLTFSSTQILILIQIASILGILVFALKKERDRIPFVPCLFLSYHALLLYTMFCR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=909547 SM123_RS07915 WP_320909391.1 1651143..1651802(+) (cclA/cilC) [Streptococcus lingualis strain S5]
ATGATCAACTTTTATTTTTTTACCATCGGTACTTGCATCGCCTCTTTTTTGGGGCTAGTTGTCGATCGTTTCCCAAACCA
ATCCATTCTCGCTCCTCGTAGTCATTGTGATCAATGTCAGCACGTCCTTGGAGTTTGGGATCTCATCCCCATTATCTCGC
AACTACTCCATCGTTTTCGCTGTCGCTATTGTCATCAGACCTATCCATTTTGGTACTGCCTTTTTGAGATCTGGAGTGGC
CTACTCTTTTTAGCCTGCGCCAATGGTTTCCTTTCTCTGCCTCAGATTCTAACACTACTGGGAGCTGCCGTTTTAGCCAT
TTATGACCTTCGCTTTATGGAATACCCTTTATTCATCTGGTGCTGTCTCCATGCCCTGGTCCTCTTTTTATCCGGTAGTA
ATCTCCTCATGCTGATCTTTTTACTCCTTGCAATCGGAGCTCACTTTTTCTTTATCGGAATGGGAGCAGGAGATTTTCTC
TTACTAGCTACCTTTTCGCTGACCTTTTCTTCTACCCAGATCCTCATTCTCATTCAGATCGCATCCATCTTAGGCATTCT
CGTCTTTGCTCTCAAAAAAGAAAGAGACCGGATTCCCTTTGTTCCCTGTCTCTTTCTCAGTTATCACGCTTTACTGCTTT
ATACGATGTTTTGCAGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

55.556

94.521

0.525
  cclA/cilC Streptococcus mitis NCTC 12261

55.556

94.521

0.525
  cclA/cilC Streptococcus pneumoniae TIGR4

55.072

94.521

0.521
  cclA/cilC Streptococcus pneumoniae Rx1

55.072

94.521

0.521
  cclA/cilC Streptococcus pneumoniae D39

55.072

94.521

0.521
  cclA/cilC Streptococcus pneumoniae R6

55.072

94.521

0.521