Detailed information NTG0090932

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L6424_RS02625
• Genome accession: NZ_AP025277
• Coordinates: 563224..564096 (-)
• Length: 290 a.a.
• NCBI ID: WP_024945429.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain NUITM-VA1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 558224..569096

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6424_RS02600 (NUITMVA1_04980)	-	559959..561143 (+)	1185	WP_024945433.1	tetratricopeptide repeat protein	-
L6424_RS02605 (NUITMVA1_04990)	mutT	561152..561565 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
L6424_RS02610 (NUITMVA1_05000)	yacG	561626..561820 (-)	195	WP_024945432.1	DNA gyrase inhibitor YacG	-
L6424_RS02615 (NUITMVA1_05010)	zapD	561830..562552 (-)	723	WP_024945431.1	cell division protein ZapD	-
L6424_RS02620 (NUITMVA1_05020)	coaE	562590..563204 (-)	615	WP_024945430.1	dephospho-CoA kinase	-
L6424_RS02625 (NUITMVA1_05030)	pilD	563224..564096 (-)	873	WP_024945429.1	prepilin peptidase	Machinery gene
L6424_RS02630 (NUITMVA1_05040)	pilC	564119..565360 (-)	1242	WP_011707570.1	type II secretion system F family protein	Machinery gene
L6424_RS02635 (NUITMVA1_05050)	pilB	565476..567182 (-)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
L6424_RS02640 (NUITMVA1_05060)	-	567186..567608 (-)	423	WP_024944770.1	pilin	-
L6424_RS02645 (NUITMVA1_05070)	nadC	567931..568788 (-)	858	WP_024944771.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32421.67 Da
• Isoelectric Point: 6.5953

>NTDB_id=90932 L6424_RS02625 WP_024945429.1 563224..564096(-) (pilD) [Aeromonas hydrophila strain NUITM-VA1]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEDRYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLHNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=90932 L6424_RS02625 WP_024945429.1 563224..564096(-) (pilD) [Aeromonas hydrophila strain NUITM-VA1]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAACAGGAAGATCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGCCACGCC
ATCACGGCCATGGAAAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAACTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCGACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGCTTGCTGTTCAACCTGGCAGGGGGATTTGCACCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATAGTGCTGCTGCTCTCGTCGCTG
GTGGGCGCTTTCATCGGGATTGGTCTCATCCTGCTGCACAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTACCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.351	98.276	0.593
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	53.521	97.931	0.524
pilD	Acinetobacter nosocomialis M2	53.521	97.931	0.524
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459