Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   L6431_RS09955 Genome accession   NZ_AP025273
Coordinates   2103958..2105298 (-) Length   446 a.a.
NCBI ID   WP_237046411.1    Uniprot ID   -
Organism   Aquipseudomonas alcaligenes strain MRCP2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2098958..2110298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6431_RS09920 - 2100144..2100581 (-) 438 WP_237046406.1 PilX N-terminal domain-containing pilus assembly protein -
  L6431_RS09925 - 2100585..2101157 (-) 573 WP_237046407.1 PilW family protein -
  L6431_RS09930 pilV 2101154..2101687 (-) 534 WP_237046408.1 type IV pilus modification protein PilV -
  L6431_RS09935 - 2101701..2102150 (-) 450 WP_272878770.1 GspH/FimT family pseudopilin -
  L6431_RS09945 - 2102249..2102764 (-) 516 WP_237046409.1 GspH/FimT family pseudopilin -
  L6431_RS09950 thiO 2102825..2103934 (+) 1110 WP_237046410.1 glycine oxidase ThiO -
  L6431_RS09955 pilR 2103958..2105298 (-) 1341 WP_237046411.1 sigma-54-dependent transcriptional regulator Regulator
  L6431_RS09960 pilS 2105301..2106893 (-) 1593 WP_237046412.1 sensor histidine kinase Regulator
  L6431_RS09965 - 2106890..2107114 (-) 225 WP_237046413.1 PP0621 family protein -
  L6431_RS09970 - 2107236..2108258 (-) 1023 WP_142136537.1 outer membrane protein assembly factor BamD -
  L6431_RS09975 rluD 2108406..2109377 (+) 972 WP_237046414.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L6431_RS09980 pgeF 2109361..2110098 (+) 738 WP_237046415.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49774.17 Da        Isoelectric Point: 5.4674

>NTDB_id=90911 L6431_RS09955 WP_237046411.1 2103958..2105298(-) (pilR) [Aquipseudomonas alcaligenes strain MRCP2]
MSTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHAEVPVA
MITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRLRSGETTEGPVDTRLLGESPPMKALRNQIQKLARSQAPV
YISGESGSGKELVARLIHEQGPRAEKPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAERFRQDLFYRLNVIELRVPPLRERREDIPLLADT
MLKRLAEGSGLPAARLSLEALDKLKCYRFPGNVRELENMLERAYTLCENDQIQADDLRLADAAPAGESGEASLAQIDNLE
DYLEEIERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=90911 L6431_RS09955 WP_237046411.1 2103958..2105298(-) (pilR) [Aquipseudomonas alcaligenes strain MRCP2]
ATGAGCACCCGGCAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTCCTGGAGATCACCCTGGGGCGGAT
GAAGCTCGACACTCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTGGCTGGCCCGGGAGCCTTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGATGGCACCGGCCTGGACCTGGTCCAGCACATCCAGCAGCGCCATGCCGAAGTACCGGTCGCC
ATGATCACCGCCTACGGCAGCCTGGACACCGCGATCAACGCCCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGT
GGACCTCGGCCGCCTGCGCGAGCTGGTCGCCACCGCCCTGCGCCTGCGCAGCGGCGAAACCACGGAGGGACCGGTAGATA
CCCGCCTGCTCGGCGAATCGCCGCCAATGAAGGCGCTACGCAACCAGATCCAGAAGCTCGCGCGCAGCCAGGCGCCGGTC
TATATCAGCGGCGAGTCCGGTAGCGGCAAGGAGCTGGTAGCGCGCCTGATCCACGAGCAAGGCCCGCGCGCCGAGAAGCC
CTTCGTACCGGTCAACTGCGGCGCCATCCCGTCAGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTTA
CCGGCGCGATAGAGGACAAGCAGGGTCTGTTCCAGGCTGCCAATGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTG
CCGCTGGCCATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAGAAAGCCGTGCGCGCCGTCGGCGGCCAACAGGAGGTGGT
GGTGGACGTGCGCATCCTCTGCGCCACACACAAGGATCTGGCTGCCGAAGTCGCCGCAGAGCGCTTCCGTCAGGATCTGT
TCTATCGCCTGAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAGCGCCGCGAGGACATCCCGCTGCTGGCTGACACC
ATGCTTAAACGCCTCGCCGAGGGCAGCGGCCTGCCGGCGGCCCGCCTGAGCCTGGAGGCGCTGGACAAGCTCAAGTGCTA
CCGCTTTCCCGGCAACGTGCGCGAACTGGAGAACATGCTGGAGCGCGCCTACACCCTGTGCGAGAACGACCAGATTCAGG
CCGACGATCTGCGCCTGGCAGATGCTGCACCGGCGGGCGAGAGCGGCGAGGCCTCGCTGGCGCAGATCGACAACCTGGAA
GACTATCTGGAAGAGATCGAGCGCAAGCTGATCATGCAGGCCCTCGAGGAAACCCGCTGGAACCGCACCGCCGCCGCCCA
GCGCCTCGGCCTGAGCTTCCGCTCCATGCGCTACCGCCTGAAGAAGCTGGGCATTGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.739

99.552

0.883
  pilR Acinetobacter baumannii strain A118

50.327

100

0.518
  luxO Vibrio cholerae strain A1552

38.393

100

0.386

Multiple sequence alignment