Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   NCY62_RS17440 Genome accession   NZ_CP139356
Coordinates   3641454..3642587 (+) Length   377 a.a.
NCBI ID   WP_064784400.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A45P     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3636454..3647587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY62_RS17415 (NCY62_17480) - 3636710..3636916 (-) 207 WP_017387367.1 hypothetical protein -
  NCY62_RS17420 (NCY62_17485) oprC 3636970..3639084 (-) 2115 WP_250733960.1 TonB-dependent copper receptor -
  NCY62_RS17425 (NCY62_17490) - 3639157..3639582 (-) 426 WP_017399716.1 DUF2946 family protein -
  NCY62_RS17430 (NCY62_17495) def 3639626..3640156 (-) 531 WP_002114101.1 peptide deformylase -
  NCY62_RS17435 (NCY62_17500) tsaP 3640279..3641433 (+) 1155 WP_250733962.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NCY62_RS17440 (NCY62_17505) dprA 3641454..3642587 (+) 1134 WP_064784400.1 DNA-processing protein DprA Machinery gene
  NCY62_RS17445 (NCY62_17510) yrdC 3642639..3643208 (+) 570 WP_005072030.1 L-threonylcarbamoyladenylate synthase -
  NCY62_RS17450 (NCY62_17515) - 3643601..3644521 (-) 921 WP_079380978.1 DMT family transporter -
  NCY62_RS17455 (NCY62_17520) - 3644626..3645279 (-) 654 WP_079380979.1 TetR/AcrR family transcriptional regulator -
  NCY62_RS17460 (NCY62_17525) nepI 3645415..3646629 (+) 1215 WP_046813020.1 MFS transporter -
  NCY62_RS17465 (NCY62_17530) yeaM 3646651..3647415 (+) 765 WP_250733964.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41810.28 Da        Isoelectric Point: 6.5419

>NTDB_id=909097 NCY62_RS17440 WP_064784400.1 3641454..3642587(+) (dprA) [Acinetobacter pittii strain A45P]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGSCEKAAQPAGLSQWRNLGLHANHLKRVDEFQTAQGQAQFEKLTEQI
QQYTDFILTADDSGYPTQLLTYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEAVVSSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=909097 NCY62_RS17440 WP_064784400.1 3641454..3642587(+) (dprA) [Acinetobacter pittii strain A45P]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAGCTGTGAAAAGGCGGCCCAACCTGCTGGATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTAACTGAGCAGATC
CAGCAATATACCGACTTTATTTTAACGGCAGATGACTCAGGCTATCCCACTCAGTTATTAACTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGTCAGGCACAAGCCTTATTACAACCACAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCAC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTACTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGATTGGCATATGGG
ATTGACGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACAATTGCAGTAACAGGAACTGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTAGCTCAAAACGGCGCGATTATTACTGAGTTTTTGCCTGGGACAC
CTCCACTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACC
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCCACTCAGTGGCAAAGTCAGCAACAAAACTCCACTGAGGAGGCTGTAGTTTCTAGTACCCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.981

100

0.91

  dprA Acinetobacter baumannii strain A118

90.451

100

0.905

  dprA Acinetobacter baylyi ADP1

71.129

100

0.719

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387