Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SM130_RS18220 Genome accession   NZ_CP139348
Coordinates   3942231..3942728 (-) Length   165 a.a.
NCBI ID   WP_102824668.1    Uniprot ID   A0A2N8S117
Organism   Stutzerimonas stutzeri strain KC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3937231..3947728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM130_RS18195 (SM130_18195) - 3937349..3938695 (-) 1347 WP_102824673.1 MotA/TolQ/ExbB proton channel family protein -
  SM130_RS18200 (SM130_18200) - 3938692..3939477 (-) 786 WP_102824672.1 DUF3450 domain-containing protein -
  SM130_RS18205 (SM130_18205) - 3939662..3940339 (+) 678 WP_102824671.1 OmpW family outer membrane protein -
  SM130_RS18210 (SM130_18210) - 3940414..3941343 (-) 930 WP_102824670.1 NAD-dependent epimerase/dehydratase family protein -
  SM130_RS18215 (SM130_18215) - 3941336..3942220 (-) 885 WP_102824669.1 sugar nucleotide-binding protein -
  SM130_RS18220 (SM130_18220) ssb 3942231..3942728 (-) 498 WP_102824668.1 single-stranded DNA-binding protein Machinery gene
  SM130_RS18225 (SM130_18225) - 3942898..3944265 (-) 1368 WP_102824667.1 MFS transporter -
  SM130_RS18230 (SM130_18230) uvrA 3944397..3947234 (+) 2838 WP_102824666.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18487.55 Da        Isoelectric Point: 5.9540

>NTDB_id=909045 SM130_RS18220 WP_102824668.1 3942231..3942728(-) (ssb) [Stutzerimonas stutzeri strain KC]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGSMQLLGGRGGSADEAPRQARPQREPQQAPRQQAQPQSQQPAARQQPAPDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=909045 SM130_RS18220 WP_102824668.1 3942231..3942728(-) (ssb) [Stutzerimonas stutzeri strain KC]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGATAAGCAGACCGGCCAGCTACAGGAACGCACCGAGT
GGCACCGTGTCGTGCTGTTCGGTAAGGTCGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGTCTGCAGACCCGCGAGTGGGAGAAGGACGGCGTCAAGCGCTACACCACCGAGATCGTGGTCGACATGAACGGCAG
CATGCAGCTGCTCGGCGGTCGTGGCGGCAGTGCCGACGAAGCACCGCGTCAAGCTCGTCCGCAGCGCGAGCCGCAACAGG
CGCCGCGTCAGCAGGCACAGCCGCAGTCGCAGCAGCCCGCTGCACGGCAGCAGCCGGCACCGGACTACGACAGCTTCGAC
GACGACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8S117

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.627

100

0.618
  ssb Glaesserella parasuis strain SC1401

46.067

100

0.497
  ssb Neisseria gonorrhoeae MS11

44.944

100

0.485
  ssb Neisseria meningitidis MC58

44.886

100

0.479