Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SOI74_RS05430 Genome accession   NZ_CP139287
Coordinates   1161429..1162181 (-) Length   250 a.a.
NCBI ID   WP_032006367.1    Uniprot ID   A0AAN4MGF9
Organism   Acinetobacter pittii strain 564U     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1156429..1167181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS05410 (SOI74_05410) aroB 1157010..1158092 (-) 1083 WP_032006366.1 3-dehydroquinate synthase -
  SOI74_RS05415 (SOI74_05415) aroK 1158121..1158690 (-) 570 WP_002116987.1 shikimate kinase AroK -
  SOI74_RS05420 (SOI74_05420) pilQ 1158702..1160828 (-) 2127 WP_017481729.1 type IV pilus secretin PilQ Machinery gene
  SOI74_RS05425 (SOI74_05425) pilP 1160891..1161418 (-) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  SOI74_RS05430 (SOI74_05430) pilO 1161429..1162181 (-) 753 WP_032006367.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI74_RS05435 (SOI74_05435) pilN 1162178..1162819 (-) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI74_RS05440 (SOI74_05440) pilM 1162819..1163877 (-) 1059 WP_032006368.1 pilus assembly protein PilM Machinery gene
  SOI74_RS05445 (SOI74_05445) ponA 1164039..1166600 (+) 2562 WP_032052651.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28225.10 Da        Isoelectric Point: 4.8782

>NTDB_id=908800 SOI74_RS05430 WP_032006367.1 1161429..1162181(-) (pilO) [Acinetobacter pittii strain 564U]
MSPDELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAAENPEHQEKNASASSVAP
DSSTANIQPK

Nucleotide


Download         Length: 753 bp        

>NTDB_id=908800 SOI74_RS05430 WP_032006367.1 1161429..1162181(-) (pilO) [Acinetobacter pittii strain 564U]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTCCT
TCAGCAATTTAACACGCTCGACATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTACTGGCTCTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
GATGCATGATTTTATTGTTGAAGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGCTATATGGGTGCTGCAGAAAATCCTGAACATCAGGAAAAAAATGCTTCGGCTTCCTCGGTAGCACCT
GATTCTTCTACTGCTAACATACAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

83.6

100

0.836
  comO Acinetobacter baylyi ADP1

69.583

96

0.668