Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SOI74_RS05425 Genome accession   NZ_CP139287
Coordinates   1160891..1161418 (-) Length   175 a.a.
NCBI ID   WP_002116864.1    Uniprot ID   A0AAN4MGG3
Organism   Acinetobacter pittii strain 564U     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1155891..1166418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS05405 (SOI74_05405) - 1156124..1156993 (-) 870 WP_032052649.1 hypothetical protein -
  SOI74_RS05410 (SOI74_05410) aroB 1157010..1158092 (-) 1083 WP_032006366.1 3-dehydroquinate synthase -
  SOI74_RS05415 (SOI74_05415) aroK 1158121..1158690 (-) 570 WP_002116987.1 shikimate kinase AroK -
  SOI74_RS05420 (SOI74_05420) pilQ 1158702..1160828 (-) 2127 WP_017481729.1 type IV pilus secretin PilQ Machinery gene
  SOI74_RS05425 (SOI74_05425) pilP 1160891..1161418 (-) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  SOI74_RS05430 (SOI74_05430) pilO 1161429..1162181 (-) 753 WP_032006367.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI74_RS05435 (SOI74_05435) pilN 1162178..1162819 (-) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI74_RS05440 (SOI74_05440) pilM 1162819..1163877 (-) 1059 WP_032006368.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19265.32 Da        Isoelectric Point: 9.0270

>NTDB_id=908799 SOI74_RS05425 WP_002116864.1 1160891..1161418(-) (pilP) [Acinetobacter pittii strain 564U]
MKLKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=908799 SOI74_RS05425 WP_002116864.1 1160891..1161418(-) (pilP) [Acinetobacter pittii strain 564U]
ATGAAACTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCCGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGAGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTGCAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATTTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88.571

100

0.886
  comL Acinetobacter baylyi ADP1

75.152

94.286

0.709