Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SOI74_RS05435 Genome accession   NZ_CP139287
Coordinates   1162178..1162819 (-) Length   213 a.a.
NCBI ID   WP_002116944.1    Uniprot ID   A0A009RUZ9
Organism   Acinetobacter pittii strain 564U     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1157178..1167819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS05415 (SOI74_05415) aroK 1158121..1158690 (-) 570 WP_002116987.1 shikimate kinase AroK -
  SOI74_RS05420 (SOI74_05420) pilQ 1158702..1160828 (-) 2127 WP_017481729.1 type IV pilus secretin PilQ Machinery gene
  SOI74_RS05425 (SOI74_05425) pilP 1160891..1161418 (-) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  SOI74_RS05430 (SOI74_05430) pilO 1161429..1162181 (-) 753 WP_032006367.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI74_RS05435 (SOI74_05435) pilN 1162178..1162819 (-) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI74_RS05440 (SOI74_05440) pilM 1162819..1163877 (-) 1059 WP_032006368.1 pilus assembly protein PilM Machinery gene
  SOI74_RS05445 (SOI74_05445) ponA 1164039..1166600 (+) 2562 WP_032052651.1 penicillin-binding protein PBP1a -
  SOI74_RS05450 (SOI74_05450) rrmA 1166616..1167440 (-) 825 WP_005078486.1 putative RNA methyltransferase -
  SOI74_RS05455 (SOI74_05455) - 1167443..1167775 (-) 333 WP_002116981.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23921.36 Da        Isoelectric Point: 5.4186

>NTDB_id=908801 SOI74_RS05435 WP_002116944.1 1162178..1162819(-) (pilN) [Acinetobacter pittii strain 564U]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=908801 SOI74_RS05435 WP_002116944.1 1162178..1162819(-) (pilN) [Acinetobacter pittii strain 564U]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATTATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGTTTGCAAGAACAGCGTGACGCA
ATTATTGAGCGCATGAAGCTCATTCAAGGTTTGCAAAGCCAACGTCCGGTCGTTGTGCGTTTGGTGGATGAATTAGTACG
TGTGACTCCAGCAGCCATGTATTTGACTAAATTCAGCCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCA
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685