Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SOI81_RS16245 Genome accession   NZ_CP139286
Coordinates   3442000..3443415 (+) Length   471 a.a.
NCBI ID   WP_320541001.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3437000..3448415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS16225 (SOI81_16225) thrC 3437256..3438395 (+) 1140 WP_216946756.1 threonine synthase -
  SOI81_RS16230 (SOI81_16230) pbpG 3438502..3439548 (-) 1047 WP_155237659.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SOI81_RS16235 (SOI81_16235) gacA 3439761..3440396 (+) 636 WP_002121174.1 response regulator -
  SOI81_RS16240 (SOI81_16240) pilS 3440407..3441975 (+) 1569 WP_320541000.1 PAS domain-containing sensor histidine kinase Regulator
  SOI81_RS16245 (SOI81_16245) pilR 3442000..3443415 (+) 1416 WP_320541001.1 sigma-54 dependent transcriptional regulator Regulator
  SOI81_RS16250 (SOI81_16250) ctpA 3443419..3444603 (-) 1185 WP_016142453.1 S41 family peptidase -
  SOI81_RS16255 (SOI81_16255) gpmI 3444619..3446166 (-) 1548 WP_320541002.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  SOI81_RS16260 (SOI81_16260) lptG 3446293..3447363 (-) 1071 WP_016142455.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 52917.08 Da        Isoelectric Point: 5.9985

>NTDB_id=908778 SOI81_RS16245 WP_320541001.1 3442000..3443415(+) (pilR) [Acinetobacter pittii strain AbaK]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFSETTLENDLLIGRSPPIENLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLTMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRERGGDILL
LATHFIQKVCTEWEIPSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLTHLAPPLRGSSVSPQIVMQQLD
QTPTVQTTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=908778 SOI81_RS16245 WP_320541001.1 3442000..3443415(+) (pilR) [Acinetobacter pittii strain AbaK]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCGTGCT
TGACCGATTTAAATCTACCCGACGGTAGTGGATTAGAATTGGTTAAACACGTTTCTCAAACTTACCCGCACACACCCATC
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCTGCATTAAAAGCGGGAGCTTTTGATTTTGTTAGTAAACC
GATTAACCAAATTCATTTAGATCAGCTATTAAAAAAAGCGCTTAACCAACCAAAACCAGAGCATGAGTTTAGTGAAACAA
CTTTAGAAAATGACCTACTAATCGGGCGTTCACCCCCTATAGAAAACTTACGGACAGCTATAAAAAAAATAGCTCGCTCC
CAAGCTCCTGTGTTTGTTACAGGTGAGTCCGGTACAGGTAAAGAAGTTGTTGCTAATTTGATTCACCGTTTAAGCAACCG
TAGCGAAGGGCCATTTATTGCCATTAACTGCGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGACATAAAA
AAGGTAGTTTTACTGGTGCGACGCAAGACAAACAAGGACTGATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCGTTAACTATGCAGGTTAAATTGCTGCGGGCTGTGCAAGAGAAAAAGATACGCCCTGTAGGCTCCGA
TCAGGAAATTGATGTTGATTTTCGAGTGATTAGCGCCAGCCATCAAGACTTGGATTTATTGGTTCAACAAGGTAAATTCC
GGCAGGACTTATTCTTCCGTATCCATGTTATGGATATTATGTTGCCGCCATTACGTGAACGTGGTGGAGACATTCTGCTC
TTGGCCACTCATTTTATTCAAAAGGTTTGTACGGAATGGGAAATTCCAAGCAAACAATTAACGGCGAGTGCTGAAACCTA
CTTATTGCAGCAAGACTTCCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGATG
AGTGCATTGATTTGACACACTTAGCACCTCCTCTTAGAGGCAGTAGTGTGAGTCCGCAAATCGTAATGCAACAACTAGAT
CAAACACCAACTGTTCAGACGACTCATCCAAAATTTCCAATGGAAGGTTTAGAACGTTATTTAGAAAATATCGAAAAAGA
TATTTTATTGAATGCGCTAAACATGACGCATTGGAATCGAACTTTGGCGGCTAAAAAGTTAGGAATGACTTTCCGCTCTT
TGCGCTATCGACTCAAAAAGTTTGGCTTAGATACCGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.624

100

0.86
  pilR Pseudomonas aeruginosa PAK

51.087

97.665

0.499