Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SOI81_RS00970 Genome accession   NZ_CP139286
Coordinates   218971..219561 (+) Length   196 a.a.
NCBI ID   WP_239967000.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 213971..224561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS00945 (SOI81_00945) - 214354..214707 (+) 354 WP_000580166.1 DUF1304 domain-containing protein -
  SOI81_RS00950 (SOI81_00950) glpM 214998..215339 (+) 342 WP_320541115.1 GlpM family protein -
  SOI81_RS00955 (SOI81_00955) tenA 215390..216064 (-) 675 WP_206218682.1 thiaminase II -
  SOI81_RS00960 (SOI81_00960) - 216326..217408 (+) 1083 WP_016142798.1 DUF475 domain-containing protein -
  SOI81_RS00965 (SOI81_00965) yajR 217555..218919 (+) 1365 WP_239975284.1 MFS transporter -
  SOI81_RS00970 (SOI81_00970) ssb 218971..219561 (+) 591 WP_239967000.1 single-stranded DNA-binding protein Machinery gene
  SOI81_RS00975 (SOI81_00975) - 219602..219925 (-) 324 WP_016143744.1 AzlD domain-containing protein -
  SOI81_RS00980 (SOI81_00980) - 219922..220617 (-) 696 WP_239975283.1 AzlC family ABC transporter permease -
  SOI81_RS00985 (SOI81_00985) ydcN 220686..221234 (+) 549 WP_141314709.1 helix-turn-helix domain-containing protein -
  SOI81_RS00990 (SOI81_00990) - 221540..222982 (+) 1443 WP_016142804.1 amino acid permease -
  SOI81_RS00995 (SOI81_00995) - 223046..224545 (-) 1500 WP_062850269.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21250.03 Da        Isoelectric Point: 6.4822

>NTDB_id=908737 SOI81_RS00970 WP_239967000.1 218971..219561(+) (ssb) [Acinetobacter pittii strain AbaK]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNNGGGYGGQ
GGFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=908737 SOI81_RS00970 WP_239967000.1 218971..219561(+) (ssb) [Acinetobacter pittii strain AbaK]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTACGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACGCGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTATACAACAGAAATTCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGTGGTAATGATTTTAATCAGCCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAACAATAACAACCAAGGTGGCGGTTACGGCCAAAACAATGGCGGTGGTTATGGTGGCCAA
GGTGGTTTTGGTAATGGTGGAAGTAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACC
AGCTGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.232

100

0.531
  ssb Vibrio cholerae strain A1552

44.776

100

0.459
  ssb Neisseria meningitidis MC58

38.693

100

0.393
  ssb Neisseria gonorrhoeae MS11

37.186

100

0.378