Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   SOI75_RS15955 Genome accession   NZ_CP139282
Coordinates   3289768..3290250 (+) Length   160 a.a.
NCBI ID   WP_017400484.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AE13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3284768..3295250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI75_RS15945 (SOI75_15945) pilX 3285082..3285891 (+) 810 WP_068535131.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI75_RS15950 (SOI75_15950) pilY1 3285903..3289757 (+) 3855 WP_068535128.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI75_RS15955 (SOI75_15955) pilY2 3289768..3290250 (+) 483 WP_017400484.1 type IV pilin protein Machinery gene
  SOI75_RS15960 (SOI75_15960) pilE 3290247..3290672 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene
  SOI75_RS15965 (SOI75_15965) rpsP 3290820..3291071 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SOI75_RS15970 (SOI75_15970) rimM 3291091..3291639 (+) 549 WP_068535124.1 ribosome maturation factor RimM -
  SOI75_RS15975 (SOI75_15975) trmD 3291682..3292437 (+) 756 WP_032004868.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOI75_RS15980 (SOI75_15980) rplS 3292657..3293025 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SOI75_RS15985 (SOI75_15985) lip 3293076..3294017 (-) 942 WP_320562707.1 triacylglycerol lipase -
  SOI75_RS15990 (SOI75_15990) - 3294133..3295164 (-) 1032 WP_016802752.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17505.79 Da        Isoelectric Point: 8.4721

>NTDB_id=908728 SOI75_RS15955 WP_017400484.1 3289768..3290250(+) (pilY2) [Acinetobacter pittii strain AE13]
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=908728 SOI75_RS15955 WP_017400484.1 3289768..3290250(+) (pilY2) [Acinetobacter pittii strain AE13]
ATGAATAAATATTATATTCTGCGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGCTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCGGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

94.375

100

0.944
  comE Acinetobacter baylyi ADP1

41.279

100

0.444