Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   SOI75_RS15950 Genome accession   NZ_CP139282
Coordinates   3285903..3289757 (+) Length   1284 a.a.
NCBI ID   WP_068535128.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AE13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3280903..3294757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI75_RS15920 (SOI75_15920) gmk 3281185..3281814 (-) 630 WP_002116973.1 guanylate kinase -
  SOI75_RS15925 (SOI75_15925) ispH 3281937..3282887 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI75_RS15930 (SOI75_15930) fimU 3283057..3283530 (+) 474 WP_016802756.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI75_RS15935 (SOI75_15935) pilV 3283524..3284084 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  SOI75_RS15940 (SOI75_15940) pilW 3284084..3285085 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  SOI75_RS15945 (SOI75_15945) pilX 3285082..3285891 (+) 810 WP_068535131.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI75_RS15950 (SOI75_15950) pilY1 3285903..3289757 (+) 3855 WP_068535128.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI75_RS15955 (SOI75_15955) pilY2 3289768..3290250 (+) 483 WP_017400484.1 type IV pilin protein Machinery gene
  SOI75_RS15960 (SOI75_15960) pilE 3290247..3290672 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene
  SOI75_RS15965 (SOI75_15965) rpsP 3290820..3291071 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SOI75_RS15970 (SOI75_15970) rimM 3291091..3291639 (+) 549 WP_068535124.1 ribosome maturation factor RimM -
  SOI75_RS15975 (SOI75_15975) trmD 3291682..3292437 (+) 756 WP_032004868.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOI75_RS15980 (SOI75_15980) rplS 3292657..3293025 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SOI75_RS15985 (SOI75_15985) lip 3293076..3294017 (-) 942 WP_320562707.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 1284 a.a.        Molecular weight: 137990.38 Da        Isoelectric Point: 7.7521

>NTDB_id=908727 SOI75_RS15950 WP_068535128.1 3285903..3289757(+) (pilY1) [Acinetobacter pittii strain AE13]
MKLKLKNFKPNNLWYAICSSSVAFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQVLVAAAPLGDASTLNTVGSQRYKLKQAVANLTAGGSTPSAHAYAEAAAYLM
GTTTYSEANYAIRKDSYIRRVRKSDNRTEYSYCTNYRDSQIDTTNLWQPCRSNNYWSNWSTSNPGVDAATAYDTSSDWTY
SYTYYYTTFNYAVANADSGIPKSKSNDTTSNPNIVVDRNASNLNAIYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTR
SATVMSTALGSTLGANFTCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLS
SRTQSDRKSDDNCSPNQTTNAVAAPGYGNGGFFPTQSAQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEY
GYLRAFEPNPANTYLTWRGNLKKYHVVLSGTNAGAFEANTGGLVYNATGAFRTGTKDYWNSSTYNDGGKVFFGGSYAKVP
LPTAGQNETRDEEGNITKYYYAVQTKIRNLFTDVSAVASDGSLTKISTSGTNLLKIPATPPEGTNPFDSVANTASYVLGK
FNASTGQDILKAFPISLKLKILNYLGYSTDISATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDENGNLTSAREQS
ILYGTMEGGLHIVDASTGVEQMAFVPADILNDPVASKALVVGQSDASAPAHGMDGAWVSDPAYSITTTGSGSSAVSKVTA
KQMNIYGGMRMGGSSYYGLNVLNPASPKLLFRVGADQTDYSRMGQSWSKPVLANIRYNGVIKRVMIVGGGYDQCYENPNI
TLSNSCFTNGKAKGNAVYIIDAKTGERLWWTSDTGSNIDNSNMKHSIVSRISTLDRNADGLVDHLYFGDLGGQIFRIDLN
NNQTKTNSTYSSFGIRVVRLANLATNDSTYDASNDYTAGNAPRFYEPPTVTIHDYGIHTFITVGIASGDRSTPLDVYPLT
GREGMSPSTALSGRPVNNVYGIIDKDFIKKNLMSLTDNQLETKDITRSTLRKNPQILRSGETRVAQIFFPNTGAGQNGWY
RSLSSMSDGTEKANNSFRIKGGLKAFEEPMAITGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTFCLPFGACLNSDGS
IDQNKENGSGFKTQTGTNCPVGASECNKNVIGSGIRGIAFVPKRDEPPVTNSCGKLQLSGNESGTGEWQCTSHLVPARWY
ERYR

Nucleotide


Download         Length: 3855 bp        

>NTDB_id=908727 SOI75_RS15950 WP_068535128.1 3285903..3289757(+) (pilY1) [Acinetobacter pittii strain AE13]
GTGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCATCTGTTCGAGTTCAGTTGCTTTTACATGGCT
AATGACAAGCTCCGTTGTGCAGGCGAGTGATTTACAAATTTATGCTTCACCTACAGCTGGTAAAAAAACTATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAACAATAGTTATGGCGAAAACCGTCTGGCCATGCTTAAAAATGGTATGAATGCT
TTTTTAGCAAGTAATAATCCTGTTTTAAATGACACTCGTGTGGGGTTGGGAAATTTCTCTGCAAATGGTGATAGCCGAAG
TGGGCAGGTTCTAGTGGCTGCTGCTCCTTTAGGAGATGCGAGTACGTTAAATACAGTGGGTTCTCAACGTTATAAATTAA
AACAGGCTGTTGCAAATTTAACTGCTGGCGGGTCAACGCCTTCAGCACATGCTTATGCGGAAGCTGCTGCTTATTTGATG
GGTACAACGACCTATTCAGAGGCAAATTATGCCATTCGAAAAGATAGCTATATAAGGCGTGTGCGAAAATCTGATAATAG
AACGGAATACTCATATTGTACGAATTATCGCGATTCACAAATCGATACTACAAATCTATGGCAACCTTGTCGTTCTAATA
ACTATTGGAGTAACTGGTCAACTTCTAATCCGGGTGTGGATGCGGCAACTGCTTATGATACTTCGTCGGATTGGACCTAT
TCTTATACTTATTACTACACCACTTTTAATTATGCTGTAGCAAATGCAGATAGTGGTATCCCAAAATCAAAATCAAACGA
TACAACCAGCAATCCGAATATTGTTGTAGATAGAAATGCCTCCAATTTAAATGCTATTTACCAATCTCCTTTGCCTGCGG
TGGCCAATCGTCAGAGTTGTGATGGGCAAGGAATCTACTTTTTATCAGATGGGGAACCGAACAATACAACAAATACACGT
TCGGCAACTGTAATGTCGACAGCCCTAGGCAGCACTTTGGGAGCAAATTTTACTTGTTCTGGAGGTTTATCTAACACGAC
AGCAGACTCTGGTTGGGCCTGTATGGGGGAATTTGCAAAAAGATTATTTGATAAAACCAAAAATCCGGCTGGAGTTTCTA
TTCAAACAGCATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTAAGTTCTTCTGATGTAAAAAATGCCTGTCGTTTAAGT
TCGAGAACCCAATCTGATCGTAAAAGTGATGATAATTGTTCGCCGAATCAGACCACAAATGCGGTCGCTGCACCTGGTTA
TGGAAATGGAGGATTTTTCCCTACCCAAAGTGCGCAAGGTGTAACAGATAGTGTTATCGCATTTATTAATAACTTAGATA
AAGTTCCTTTAGAACCCTTAACCACAGGTGCTATCTCTGTTCCTTATGATGCACTAAATCCTAAAAATTTACAGGAATAT
GGTTACTTACGTGCTTTTGAGCCAAACCCGGCTAACACCTACTTAACATGGCGAGGAAATTTAAAGAAATATCATGTTGT
TTTATCGGGAACAAATGCTGGTGCTTTTGAAGCTAATACTGGTGGGTTGGTTTACAACGCAACTGGGGCCTTTAGAACGG
GTACAAAAGATTATTGGAATAGCTCTACTTATAATGATGGAGGTAAAGTCTTTTTTGGTGGTTCATATGCAAAAGTTCCT
TTACCAACTGCTGGGCAAAATGAAACACGTGATGAAGAAGGAAATATCACAAAATATTATTACGCAGTACAAACTAAAAT
CCGCAACTTATTTACTGATGTTTCCGCCGTCGCATCAGATGGTAGCTTAACGAAAATATCGACTTCTGGAACTAATTTGC
TAAAAATTCCAGCTACTCCACCAGAAGGAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGGAAAA
TTTAATGCATCAACTGGACAAGATATTTTAAAAGCTTTCCCGATTAGCTTGAAATTAAAAATATTAAATTATCTAGGTTA
CTCAACTGATATTAGTGCTACGACTTTACCTTCGTCATTAGTTACATCGAATGAACCCTATTTATCGATGGGCGGTAGTA
TTCATTCTTTACCGGTACAGCTTACCTATAATGGAACATTAGATGAAAATGGGAATTTAACATCTGCGCGTGAACAATCC
ATTCTCTATGGAACAATGGAAGGCGGTTTGCATATTGTGGATGCCTCAACTGGTGTAGAACAAATGGCTTTCGTTCCCGC
TGATATATTAAATGATCCAGTTGCATCAAAAGCTTTAGTTGTTGGCCAAAGTGATGCTTCAGCCCCTGCTCACGGTATGG
ATGGGGCTTGGGTATCTGACCCTGCATATAGTATTACTACAACGGGAAGCGGTAGTTCAGCAGTATCAAAAGTAACTGCA
AAGCAAATGAATATTTATGGTGGTATGCGAATGGGGGGTAGCAGCTATTATGGCTTAAATGTCTTAAATCCTGCTTCACC
TAAGCTCCTCTTTAGAGTAGGAGCAGACCAAACTGATTATAGTCGTATGGGGCAGAGTTGGTCTAAACCTGTACTTGCGA
ATATACGTTATAACGGGGTGATTAAACGGGTCATGATTGTTGGTGGTGGCTACGACCAATGTTATGAAAACCCGAATATT
ACCTTGAGTAACTCTTGCTTTACGAATGGAAAAGCAAAAGGGAATGCTGTTTATATTATTGATGCTAAAACTGGGGAGCG
CTTATGGTGGACTAGTGATACAGGCTCTAATATAGATAATTCTAATATGAAGCACAGTATTGTTAGTCGCATTAGTACCT
TAGATCGAAATGCTGATGGTTTAGTCGACCATTTATATTTTGGTGATTTAGGCGGGCAAATTTTCCGTATCGATCTTAAT
AATAACCAGACAAAAACAAATTCAACTTATAGCAGTTTCGGTATTCGAGTTGTTCGATTAGCTAATTTGGCAACAAATGA
CTCAACTTATGATGCTTCGAATGATTATACCGCTGGGAATGCGCCGCGTTTTTATGAACCGCCAACAGTGACAATTCACG
ATTATGGTATCCACACTTTTATTACTGTAGGCATTGCTTCAGGGGACCGCAGTACACCGTTAGATGTTTACCCCCTTACA
GGCCGTGAGGGAATGTCACCGAGCACCGCATTAAGCGGAAGACCTGTAAACAATGTCTATGGGATTATCGATAAAGACTT
TATCAAAAAGAATCTGATGTCTTTAACTGATAACCAACTTGAAACAAAAGATATTACTCGATCGACGCTTCGAAAAAATC
CACAAATTTTACGATCTGGAGAAACACGAGTAGCACAGATTTTCTTTCCCAACACTGGGGCGGGACAAAACGGTTGGTAT
CGCTCGCTTTCTAGTATGAGCGATGGTACCGAAAAAGCTAATAATAGTTTCCGTATTAAAGGAGGTCTTAAAGCTTTTGA
AGAGCCTATGGCAATTACAGGGACTTTAATTGTGCCTGTTTATGATCCACAGGGAACAGGTATTGTAGCGGCAGACCCAT
GTTTACCCCGTGTAGTAGGTGAAACTGACCAGCAGACGTTCTGTTTACCATTTGGCGCCTGCCTTAATTCTGATGGGTCA
ATTGATCAAAATAAAGAGAATGGAAGTGGATTCAAAACACAAACTGGTACTAATTGCCCAGTAGGAGCTTCTGAATGTAA
TAAAAACGTTATTGGCTCCGGTATTCGCGGCATAGCATTTGTTCCAAAAAGAGATGAGCCTCCAGTGACTAATAGTTGTG
GGAAATTACAACTGTCTGGGAACGAGAGTGGAACGGGCGAGTGGCAATGTACAAGTCACTTAGTTCCTGCGCGCTGGTAT
GAGCGTTATCGCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(715-965)

von Willebrand factor type A domain (VWA_2)

(51-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

85.271

100

0.857