Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   SOI75_RS15945 Genome accession   NZ_CP139282
Coordinates   3285082..3285891 (+) Length   269 a.a.
NCBI ID   WP_068535131.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AE13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3280082..3290891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI75_RS15910 (SOI75_15910) - 3280640..3280795 (-) 156 Protein_3102 hypothetical protein -
  SOI75_RS15915 (SOI75_15915) rpoZ 3280834..3281112 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI75_RS15920 (SOI75_15920) gmk 3281185..3281814 (-) 630 WP_002116973.1 guanylate kinase -
  SOI75_RS15925 (SOI75_15925) ispH 3281937..3282887 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI75_RS15930 (SOI75_15930) fimU 3283057..3283530 (+) 474 WP_016802756.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI75_RS15935 (SOI75_15935) pilV 3283524..3284084 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  SOI75_RS15940 (SOI75_15940) pilW 3284084..3285085 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  SOI75_RS15945 (SOI75_15945) pilX 3285082..3285891 (+) 810 WP_068535131.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI75_RS15950 (SOI75_15950) pilY1 3285903..3289757 (+) 3855 WP_068535128.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI75_RS15955 (SOI75_15955) pilY2 3289768..3290250 (+) 483 WP_017400484.1 type IV pilin protein Machinery gene
  SOI75_RS15960 (SOI75_15960) pilE 3290247..3290672 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28544.35 Da        Isoelectric Point: 7.7238

>NTDB_id=908726 SOI75_RS15945 WP_068535131.1 3285082..3285891(+) (pilX) [Acinetobacter pittii strain AE13]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKQTLAEC
LGNHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=908726 SOI75_RS15945 WP_068535131.1 3285082..3285891(+) (pilX) [Acinetobacter pittii strain AE13]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAATTTTTGTTATAAGCCTGTTTCTACATCAACAAA
TTTTGCTCAGACTAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GCTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACGCAACGTATTCGGGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGGAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.338

100

0.903