Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   SOI75_RS05100 Genome accession   NZ_CP139282
Coordinates   1053852..1054232 (-) Length   126 a.a.
NCBI ID   WP_002121425.1    Uniprot ID   A0A009HD22
Organism   Acinetobacter pittii strain AE13     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1048852..1059232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI75_RS05070 (SOI75_05070) tadA 1048856..1049359 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  SOI75_RS05075 (SOI75_05075) hibch 1049365..1050489 (-) 1125 WP_016803061.1 enoyl-CoA hydratase/isomerase family protein -
  SOI75_RS05080 (SOI75_05080) ung 1050486..1051199 (-) 714 WP_002121342.1 uracil-DNA glycosylase -
  SOI75_RS05085 (SOI75_05085) - 1051253..1051849 (-) 597 WP_002121363.1 6-pyruvoyl trahydropterin synthase family protein -
  SOI75_RS05090 (SOI75_05090) gspK 1052077..1053036 (-) 960 WP_002121457.1 type II secretion system minor pseudopilin GspK -
  SOI75_RS05095 (SOI75_05095) xcpW 1053037..1053852 (-) 816 WP_002121460.1 type II secretion system minor pseudopilin GspJ Machinery gene
  SOI75_RS05100 (SOI75_05100) xcpV 1053852..1054232 (-) 381 WP_002121425.1 type II secretion system minor pseudopilin GspI Machinery gene
  SOI75_RS05105 (SOI75_05105) - 1054222..1054776 (-) 555 WP_002121405.1 type II secretion system protein -
  SOI75_RS05110 (SOI75_05110) - 1054783..1055391 (-) 609 WP_002121414.1 TetR/AcrR family transcriptional regulator -
  SOI75_RS05115 (SOI75_05115) ycfH 1055428..1056201 (-) 774 WP_002121462.1 TatD family hydrolase -
  SOI75_RS05120 (SOI75_05120) pilZ 1056219..1056560 (-) 342 WP_320562658.1 PilZ domain-containing protein -
  SOI75_RS05125 (SOI75_05125) holB 1056571..1057551 (-) 981 WP_002121362.1 DNA polymerase III subunit delta' -
  SOI75_RS05130 (SOI75_05130) kdsB 1057565..1058326 (-) 762 WP_002121419.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=908692 SOI75_RS05100 WP_002121425.1 1053852..1054232(-) (xcpV) [Acinetobacter pittii strain AE13]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=908692 SOI75_RS05100 WP_002121425.1 1053852..1054232(-) (xcpV) [Acinetobacter pittii strain AE13]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCAGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937