Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   SOI77_RS01710 Genome accession   NZ_CP139275
Coordinates   363398..364207 (+) Length   269 a.a.
NCBI ID   WP_046811883.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG138     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358398..369207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS01675 (SOI77_01675) - 358956..359111 (-) 156 WP_014207816.1 hypothetical protein -
  SOI77_RS01680 (SOI77_01680) rpoZ 359150..359428 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI77_RS01685 (SOI77_01685) gmk 359501..360130 (-) 630 WP_002116973.1 guanylate kinase -
  SOI77_RS01690 (SOI77_01690) ispH 360253..361203 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI77_RS01695 (SOI77_01695) fimU 361373..361846 (+) 474 WP_033848876.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI77_RS01700 (SOI77_01700) pilV 361840..362400 (+) 561 WP_081038603.1 type IV pilus modification protein PilV Machinery gene
  SOI77_RS01705 (SOI77_01705) pilW 362400..363401 (+) 1002 WP_320562003.1 PilW family protein Machinery gene
  SOI77_RS01710 (SOI77_01710) pilX 363398..364207 (+) 810 WP_046811883.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI77_RS01715 (SOI77_01715) pilY1 364219..368073 (+) 3855 WP_320562004.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI77_RS01720 (SOI77_01720) pilY2 368084..368566 (+) 483 WP_005804550.1 type IV pilin protein Machinery gene
  SOI77_RS01725 (SOI77_01725) pilE 368563..368988 (+) 426 WP_025464177.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28542.38 Da        Isoelectric Point: 7.7238

>NTDB_id=908605 SOI77_RS01710 WP_046811883.1 363398..364207(+) (pilX) [Acinetobacter pittii strain HCG138]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=908605 SOI77_RS01710 WP_046811883.1 363398..364207(+) (pilX) [Acinetobacter pittii strain HCG138]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGTCAAGTGAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTTATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCGGTTGTTGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGTTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.338

100

0.903