Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   SOI77_RS01695 Genome accession   NZ_CP139275
Coordinates   361373..361846 (+) Length   157 a.a.
NCBI ID   WP_033848876.1    Uniprot ID   A0A013SJ74
Organism   Acinetobacter pittii strain HCG138     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356373..366846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS01670 (SOI77_01670) spoT 356835..358940 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  SOI77_RS01675 (SOI77_01675) - 358956..359111 (-) 156 WP_014207816.1 hypothetical protein -
  SOI77_RS01680 (SOI77_01680) rpoZ 359150..359428 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI77_RS01685 (SOI77_01685) gmk 359501..360130 (-) 630 WP_002116973.1 guanylate kinase -
  SOI77_RS01690 (SOI77_01690) ispH 360253..361203 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI77_RS01695 (SOI77_01695) fimU 361373..361846 (+) 474 WP_033848876.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI77_RS01700 (SOI77_01700) pilV 361840..362400 (+) 561 WP_081038603.1 type IV pilus modification protein PilV Machinery gene
  SOI77_RS01705 (SOI77_01705) pilW 362400..363401 (+) 1002 WP_320562003.1 PilW family protein Machinery gene
  SOI77_RS01710 (SOI77_01710) pilX 363398..364207 (+) 810 WP_046811883.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16882.57 Da        Isoelectric Point: 7.7942

>NTDB_id=908602 SOI77_RS01695 WP_033848876.1 361373..361846(+) (fimU) [Acinetobacter pittii strain HCG138]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGAQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=908602 SOI77_RS01695 WP_033848876.1 361373..361846(+) (fimU) [Acinetobacter pittii strain HCG138]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTGCGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAATATCACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013SJ74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879