Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   SOI77_RS01705 Genome accession   NZ_CP139275
Coordinates   362400..363401 (+) Length   333 a.a.
NCBI ID   WP_320562003.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG138     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357400..368401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS01675 (SOI77_01675) - 358956..359111 (-) 156 WP_014207816.1 hypothetical protein -
  SOI77_RS01680 (SOI77_01680) rpoZ 359150..359428 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI77_RS01685 (SOI77_01685) gmk 359501..360130 (-) 630 WP_002116973.1 guanylate kinase -
  SOI77_RS01690 (SOI77_01690) ispH 360253..361203 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI77_RS01695 (SOI77_01695) fimU 361373..361846 (+) 474 WP_033848876.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI77_RS01700 (SOI77_01700) pilV 361840..362400 (+) 561 WP_081038603.1 type IV pilus modification protein PilV Machinery gene
  SOI77_RS01705 (SOI77_01705) pilW 362400..363401 (+) 1002 WP_320562003.1 PilW family protein Machinery gene
  SOI77_RS01710 (SOI77_01710) pilX 363398..364207 (+) 810 WP_046811883.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI77_RS01715 (SOI77_01715) pilY1 364219..368073 (+) 3855 WP_320562004.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35717.33 Da        Isoelectric Point: 6.6395

>NTDB_id=908604 SOI77_RS01705 WP_320562003.1 362400..363401(+) (pilW) [Acinetobacter pittii strain HCG138]
MAHSFVSWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTATNSNNVNFVPNVGTNTYIANTLLSRGAGDTVSTVSNHWKGLSNIQNSSDAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=908604 SOI77_RS01705 WP_320562003.1 362400..363401(+) (pilW) [Acinetobacter pittii strain HCG138]
ATGGCTCACTCATTTGTATCATGGAAGCAGCGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTGGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGCTTGGAATATATTGCCCGTGATATACGCCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACGACCCCTTGGGGCGGTGTTGTATTAACTGGCTCAACTGCAACCAATAGTAACAATGTTAATTTTGTTCCTAA
CGTTGGAACAAATACTTATATTGCTAACACACTACTTAGTCGTGGTGCAGGGGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAGATGCAGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACAAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTCTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGATTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACGCCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTACATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

85.586

100

0.856