Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   SOI77_RS01720 Genome accession   NZ_CP139275
Coordinates   368084..368566 (+) Length   160 a.a.
NCBI ID   WP_005804550.1    Uniprot ID   A0A009N252
Organism   Acinetobacter pittii strain HCG138     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 363084..373566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS01710 (SOI77_01710) pilX 363398..364207 (+) 810 WP_046811883.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI77_RS01715 (SOI77_01715) pilY1 364219..368073 (+) 3855 WP_320562004.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI77_RS01720 (SOI77_01720) pilY2 368084..368566 (+) 483 WP_005804550.1 type IV pilin protein Machinery gene
  SOI77_RS01725 (SOI77_01725) pilE 368563..368988 (+) 426 WP_025464177.1 type IV pilin protein Machinery gene
  SOI77_RS01730 (SOI77_01730) rpsP 369136..369387 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SOI77_RS01735 (SOI77_01735) rimM 369407..369955 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  SOI77_RS01740 (SOI77_01740) trmD 369998..370753 (+) 756 WP_005067137.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOI77_RS01745 (SOI77_01745) rplS 370973..371341 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SOI77_RS01750 (SOI77_01750) lip 371393..372334 (-) 942 WP_014207808.1 lipase family alpha/beta hydrolase -
  SOI77_RS01755 (SOI77_01755) - 372450..373481 (-) 1032 WP_320562005.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17550.79 Da        Isoelectric Point: 8.4721

>NTDB_id=908607 SOI77_RS01720 WP_005804550.1 368084..368566(+) (pilY2) [Acinetobacter pittii strain HCG138]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=908607 SOI77_RS01720 WP_005804550.1 368084..368566(+) (pilY2) [Acinetobacter pittii strain HCG138]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACAGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009N252

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

94.375

100

0.944
  comE Acinetobacter baylyi ADP1

40.678

100

0.45