Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SOI77_RS00980 Genome accession   NZ_CP139275
Coordinates   219850..220437 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG138     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 214850..225437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS00955 (SOI77_00955) - 215471..215824 (+) 354 WP_000580165.1 DUF1304 domain-containing protein -
  SOI77_RS00960 (SOI77_00960) glpM 215877..216218 (+) 342 WP_000263330.1 GlpM family protein -
  SOI77_RS00965 (SOI77_00965) tenA 216268..216942 (-) 675 WP_032057178.1 thiaminase II -
  SOI77_RS00970 (SOI77_00970) - 217205..218287 (+) 1083 WP_032054476.1 DUF475 domain-containing protein -
  SOI77_RS00975 (SOI77_00975) yajR 218434..219798 (+) 1365 WP_005078603.1 MFS transporter -
  SOI77_RS00980 (SOI77_00980) ssb 219850..220437 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  SOI77_RS00985 (SOI77_00985) - 220478..220801 (-) 324 WP_002117414.1 AzlD domain-containing protein -
  SOI77_RS00990 (SOI77_00990) - 220798..221493 (-) 696 WP_320561964.1 AzlC family ABC transporter permease -
  SOI77_RS00995 (SOI77_00995) ydcN 221562..222110 (+) 549 WP_320561965.1 XRE family transcriptional regulator -
  SOI77_RS01000 (SOI77_01000) - 222416..223858 (+) 1443 WP_320561966.1 amino acid permease -
  SOI77_RS01005 (SOI77_01005) - 223924..225423 (-) 1500 WP_025469774.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=908595 SOI77_RS00980 WP_005066890.1 219850..220437(+) (ssb) [Acinetobacter pittii strain HCG138]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=908595 SOI77_RS00980 WP_005066890.1 219850..220437(+) (ssb) [Acinetobacter pittii strain HCG138]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACGCGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATTCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCTCCTAAAGCGCCACAACAACCGGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385