Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   SOI79_RS09440 Genome accession   NZ_CP139266
Coordinates   1974715..1975197 (+) Length   160 a.a.
NCBI ID   WP_057061734.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1969715..1980197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI79_RS09430 (SOI79_09430) pilX 1970029..1970838 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI79_RS09435 (SOI79_09435) pilY1 1970850..1974704 (+) 3855 WP_057061736.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI79_RS09440 (SOI79_09440) pilY2 1974715..1975197 (+) 483 WP_057061734.1 type IV pilin protein Machinery gene
  SOI79_RS09445 (SOI79_09445) pilE 1975194..1975619 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene
  SOI79_RS09450 (SOI79_09450) rpsP 1975767..1976018 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SOI79_RS09455 (SOI79_09455) rimM 1976038..1976586 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  SOI79_RS09460 (SOI79_09460) trmD 1976629..1977384 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOI79_RS09465 (SOI79_09465) rplS 1977604..1977972 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SOI79_RS09470 (SOI79_09470) lip 1978025..1978966 (-) 942 WP_081037636.1 lipase family alpha/beta hydrolase -
  SOI79_RS09475 (SOI79_09475) - 1979082..1980113 (-) 1032 WP_057061732.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17548.81 Da        Isoelectric Point: 8.4721

>NTDB_id=908536 SOI79_RS09440 WP_057061734.1 1974715..1975197(+) (pilY2) [Acinetobacter pittii strain HUM14]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKVTTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=908536 SOI79_RS09440 WP_057061734.1 1974715..1975197(+) (pilY2) [Acinetobacter pittii strain HUM14]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGTGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

40.113

100

0.444