Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   SOI79_RS09430 Genome accession   NZ_CP139266
Coordinates   1970029..1970838 (+) Length   269 a.a.
NCBI ID   WP_017481716.1    Uniprot ID   A0AAN4MGD2
Organism   Acinetobacter pittii strain HUM14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1965029..1975838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI79_RS09395 (SOI79_09395) - 1965587..1965709 (-) 123 Protein_1817 hypothetical protein -
  SOI79_RS09400 (SOI79_09400) rpoZ 1965781..1966059 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI79_RS09405 (SOI79_09405) gmk 1966132..1966761 (-) 630 WP_002116973.1 guanylate kinase -
  SOI79_RS09410 (SOI79_09410) ispH 1966884..1967834 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI79_RS09415 (SOI79_09415) fimU 1968004..1968477 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI79_RS09420 (SOI79_09420) pilV 1968471..1969031 (+) 561 WP_081037637.1 type IV pilus modification protein PilV Machinery gene
  SOI79_RS09425 (SOI79_09425) pilW 1969031..1970032 (+) 1002 WP_057061737.1 PilW family protein Machinery gene
  SOI79_RS09430 (SOI79_09430) pilX 1970029..1970838 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI79_RS09435 (SOI79_09435) pilY1 1970850..1974704 (+) 3855 WP_057061736.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI79_RS09440 (SOI79_09440) pilY2 1974715..1975197 (+) 483 WP_057061734.1 type IV pilin protein Machinery gene
  SOI79_RS09445 (SOI79_09445) pilE 1975194..1975619 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28558.38 Da        Isoelectric Point: 7.7238

>NTDB_id=908534 SOI79_RS09430 WP_017481716.1 1970029..1970838(+) (pilX) [Acinetobacter pittii strain HUM14]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=908534 SOI79_RS09430 WP_017481716.1 1970029..1970838(+) (pilX) [Acinetobacter pittii strain HUM14]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAATTTTTGTTATAAGCCTGTTTCTACATCAACAAA
TTTTGCTCAGACTAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACGCAACGTATTCGGGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907