Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SOI79_RS08795 Genome accession   NZ_CP139266
Coordinates   1847780..1848367 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1842780..1853367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI79_RS08770 (SOI79_08770) - 1842856..1843656 (-) 801 WP_068976243.1 SDR family NAD(P)-dependent oxidoreductase -
  SOI79_RS08775 (SOI79_08775) - 1843760..1844131 (-) 372 WP_068929809.1 MerR family transcriptional regulator -
  SOI79_RS08780 (SOI79_08780) tenA 1844198..1844872 (-) 675 WP_005066884.1 thiaminase II -
  SOI79_RS08785 (SOI79_08785) - 1845135..1846217 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  SOI79_RS08790 (SOI79_08790) yajR 1846364..1847728 (+) 1365 WP_023187735.1 MFS transporter -
  SOI79_RS08795 (SOI79_08795) ssb 1847780..1848367 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  SOI79_RS08800 (SOI79_08800) - 1848408..1848731 (-) 324 WP_068976244.1 AzlD domain-containing protein -
  SOI79_RS08805 (SOI79_08805) - 1848728..1849423 (-) 696 WP_068976245.1 AzlC family ABC transporter permease -
  SOI79_RS08810 (SOI79_08810) ydcN 1849492..1850040 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  SOI79_RS08815 (SOI79_08815) - 1850346..1851788 (+) 1443 WP_002117418.1 amino acid permease -
  SOI79_RS08820 (SOI79_08820) - 1851853..1853352 (-) 1500 WP_025469774.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=908524 SOI79_RS08795 WP_005066890.1 1847780..1848367(+) (ssb) [Acinetobacter pittii strain HUM14]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=908524 SOI79_RS08795 WP_005066890.1 1847780..1848367(+) (ssb) [Acinetobacter pittii strain HUM14]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAGCAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAATGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGTGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCGCCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385